SOAP: short oligonucleotide alignment program. - Ruiqiang Li; Yingrui Li; Karsten Kristiansen; Jun Wang 004 (Bioinform., 2008)

SOAP2: an improved ultrafast tool for short read alignment. - Ruiqiang Li; Chang Yu; Yingrui Li; Tak Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang 004 (Bioinform., 2009)

The YH database: the first Asian diploid genome database. - Guoqing Li; Lijia Ma; Chao Song; Zhentao Yang; Xiulan Wang; Hui Huang; Yingrui Li; Ruiqiang Li; Xiuqing Zhang; Huanming Yang; Jian Wang 065; Jun Wang 004 (Nucleic Acids Res., 2009)

Estimation of allele frequency and association mapping using next-generation sequencing data. - Su Yeon Kim; Kirk E. Lohmueller; Anders Albrechtsen; Yingrui Li; Thorfinn Korneliussen; Geng Tian; Niels Grarup; Tao Jiang; Gitte Andersen; Daniel Witte; Torben Jørgensen; Torben Hansen; et al. (BMC Bioinform., 2011)

An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis. - Lachlan James M. Coin; Dandan Cao; Jingjing Ren; Xianbo Zuo; Liangdan Sun; Sen Yang; Xuejun Zhang; Yong Cui; Yingrui Li; Xin Jin; Jun Wang 004 (Bioinform., 2012)

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. - Chi-Man Liu; Thomas K. F. Wong; Edward Wu; Ruibang Luo; Siu-Ming Yiu; Yingrui Li; Bingqiang Wang; Chang Yu; Xiaowen Chu 001; Kaiyong Zhao; Ruiqiang Li; Tak Wah Lam (Bioinform., 2012)

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly. - Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang; Yingrui Li; Tak Wah Lam; Ruibang Luo (Bioinform., 2012)

YHap: a population model for probabilistic assignment of Y haplogroups from re-sequencing data. - Fan Zhang 090; Ruoyan Chen; Dongbing Liu; Xiaotian Yao; Guoqing Li; Yabin Jin; Chang Yu; Yingrui Li; Lachlan James M. Coin (BMC Bioinform., 2013)

Integrative Analysis of Two Cell Lines Derived from a Non-Small-Lung Cancer Patient - A Panomics Approach. - Oleg Mayba; Florian Gnad; Michael Peyton; Fan Zhang 090; Kimberly Walter; Pan Du 006; Melanie A. Huntley; Zhaoshi Jiang; Jinfeng Liu; Peter M. Haverty; Robert Gentleman; Ruiqiang Li; et al. (Pacific Symposium on Biocomputing, 2014)

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. - Yinlong Xie; Gengxiong Wu; Jingbo Tang; Ruibang Luo; Jordan Patterson; Shanlin Liu; Weihua Huang; Guangzhu He; Shengchang Gu; Shengkang Li; Xin Zhou; Tak Wah Lam; et al. (Bioinform., 2014)

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). - Ruibang Luo; Jeanno Cheung; Edward Wu; Heng Wang; Sze-Hang Chan; Wai-Chun Law; Guangzhu He; Chang Yu; Chi-Man Liu; Dazong Zhou; Yingrui Li; Ruiqiang Li; et al. (BMC Bioinform., 2015)

Impact of Height and Downtilt of Base Station Antenna for Millimeter-Wave Communication Networks with 3D LoS Probability. - Xiang Liu; Jing Xu; Ruijun Shu; Yingrui Li (WCSP, 2019)

Investigation on X-ray Photocurrent Response of CdZnTe Photon Counting Detectors. - Yingrui Li; Gangqiang Zha; Yu Guo; Shouzhi Xi; Lingyan Xu; Wanqi Jie (Sensors, 2020)

Effect of Deep-Level Defects on the Performance of CdZnTe Photon Counting Detectors. - Yingrui Li; Gangqiang Zha; Dengke Wei; Fan Yang; Jiangpeng Dong; Shouzhi Xi; Lingyan Xu; Wanqi Jie (Sensors, 2020)

Digital-Insole: An Interactive System of Foot Acupoint Physiotherapy for Office Workers. - Yousheng Yao; Jiacheng Lou; Fangtian Ying; Yuan Xie; Xuesong Li; Yingrui Li (DSIE, 2022)

Digital-Pen: An Interactive System for Correcting Writing Posture of Primary School Students. - Yousheng Yao; Jiacheng Lou; Guanghui Huang; Xuesong Li; Yingrui Li (ICEC, 2022)

TBR-NER: Research on COVID-19 Text Information Extraction Based on Joint Learning of Topic Recognition and Named Entity Recognition. - Xin Feng 004; Yingrui Li; Zhang Hang; Zhang Fan; Qiong Yu; Ruihao Xin (J. Sensors, 2022)

Dual-Channel Structure Design for Sales of Blind Box Products Considering Probability Discrimination. - Li Hu; Yingrui Li; Zongyin Li; Yang Liu (IEEE Trans. Engineering Management, 2024)

Model-free predictive current control based on improved sliding mode disturbance observer. - Qingkun Wei; Cao Tan; Mingji Hao; Xuewei Chen; Yingrui Li; Wenqing Ge (Trans. Inst. Meas. Control, 2024)

Improved active disturbance rejection control for electro-hydrostatic actuators via actor-critic reinforcement learning. - Yingrui Li; Yixuan Jiang; Jiayu Lu; Cao Tan (Eng. Appl. Artif. Intell., 2025)