Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares. - Hyunsoo Kim; Yingtao Bi; Ramana V. Davuluri (BIBE, 2010)

The efficiency of logistic regression compared to normal discriminant analysis under class-conditional classification noise. - Yingtao Bi; Daniel R. Jeske (J. Multivar. Anal., 2010)

IsoformEx: Isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data. - Hyunsoo Kim; Yingtao Bi; Sharmistha Pal; Ravi Gupta; Ramana V. Davuluri (BMC Bioinform., 2011)

NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data. - Yingtao Bi; Ramana V. Davuluri (BMC Bioinform., 2013)

Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier. - Segun Jung; Yingtao Bi; Ramana V. Davuluri (ICCABS, 2014)

An innovative two-stage fuzzy kNN-DST classifier for unknown intrusion detection. - Xueyan Jing; Yingtao Bi; Hai Deng (Int. Arab J. Inf. Technol., 2016)

Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms. - Matthew Dapas; Manoj Kandpal; Yingtao Bi; Ramana V. Davuluri (Briefings Bioinform., 2017)