Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis. - Yingyao Zhou; Ruben Abagyan (BMC Bioinform., 2002)

Statistical Validation of Compound Structure-Selectivity Relationship Using NCI Cancer Database. - Jing Li 002; Chris Benner; Tao Jiang 001; Yingyao Zhou (METMBS, 2003)

Systems biology and malaria. - Elizabeth A. Winzeler; Karine G. Le Roch; Yingyao Zhou; Peter L. Blair; Muni Grainger; J. Kathleen Moch; J. David Haynes; Patricia De la Vega; Anthony A. Holder; Serge Batalov; Daniel J. Carucci (RECOMB, 2004)

Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays. - Leah Barrera; Chris Benner; Yong-Chuan Tao; Elizabeth A. Winzeler; Yingyao Zhou (BMC Bioinform., 2004)

In silico gene function prediction using ontology-based pattern identification. - Yingyao Zhou; Jason A. Young; Andrey Santrosyan; Kaisheng Chen; S. Frank Yan; Elizabeth A. Winzeler (Bioinform., 2005)

Novel Statistical Approach for Primary High-Throughput Screening Hit Selection. - S. Frank Yan; Hayk Asatryan; Jing Li 002; Yingyao Zhou (J. Chem. Inf. Model., 2005)

Haplotype-based quantitative trait mapping using a clustering algorithm. - Jing Li 002; Yingyao Zhou; Robert C. Elston (BMC Bioinform., 2006)

Learning from the Data: Mining of Large High-Throughput Screening Databases. - S. Frank Yan; Frederick J. King; Yun He; Jeremy S. Caldwell; Yingyao Zhou (J. Chem. Inf. Model., 2006)

Automated Microscopy Screen to Identify Components Required for Mitotic Cell Cycle Progression in Human Cells. - Daniel R. Rines; Mariana Gomez; Yingyao Zhou; Paul DeJesus; Seanna Grob; Serge Batalov; Marc Labow; Dieter Huesken; Craig Mickanin; Jonathan Hall; Mischa Reinhardt; Francois Natt; et al. (ISBI, 2007)

Study of gene function based on spatial co-expression in a high-resolution mouse brain atlas. - Zheng Liu; S. Frank Yan; John R. Walker; Theresa A. Zwingman; Tao Jiang 001; Jing Li 002; Yingyao Zhou (BMC Syst. Biol., 2007)

Large-Scale Annotation of Small-Molecule Libraries Using Public Databases. - Yingyao Zhou; Bin Zhou; Kaisheng Chen; S. Frank Yan; Frederick J. King; Shumei Jiang; Elizabeth A. Winzeler (J. Chem. Inf. Model., 2007)

Chemical-Text Hybrid Search Engines. - Yingyao Zhou; Bin Zhou; Shumei Jiang; Frederick J. King (J. Chem. Inf. Model., 2010)

Chemical and Biological Properties of Frequent Screening Hits. - Jianwei Che; Frederick J. King; Bin Zhou; Yingyao Zhou (J. Chem. Inf. Model., 2012)

A cell-level quality control workflow for high-throughput image analysis. - Minhua Qiu; Bin Zhou; Frederick Lo; Steven Cook; Jason Chyba; Doug Quackenbush; Jason Matzen; Zhizhong Li; Puiying Annie Mak; Kaisheng Chen; Yingyao Zhou (BMC Bioinform., 2020)

Predicting drug approvals: The Novartis data science and artificial intelligence challenge. - Kien Wei Siah; Nicholas W. Kelley; Steffen Ballerstedt; Björn Holzhauer; Tianmeng Lyu; David Mettler; Sophie Sun; Simon Wandel; Yang Zhong; Bin Zhou; Shifeng Pan; Yingyao Zhou; et al. (Patterns, 2021)

Interpreting Training Aspects of Deep-Learned Error-Correcting Codes. - Natasha Devroye; Abhijeet Mulgund; Raj Shekhar; György Turán; Milos Zefran; Yingyao Zhou (ISIT, 2023)

Higher-order Interpretations of Deepcode, a Learned Feedback Code. - Yingyao Zhou; Natasha Devroye; György Turán; Milos Zefran (Allerton, 2024)

Interpreting Deepcode, a Learned Feedback Code. - Yingyao Zhou; Natasha Devroye; György Turán; Milos Zefran (ISIT, 2024)

Learned codes for broadcast channels with feedback. - Yingyao Zhou; Natasha Devroye (CoRR, 2024)

Renaissance of Literate Programming in the Era of LLMs: Enhancing LLM-Based Code Generation in Large-Scale Projects. - Wuyang Zhang; Yansong Li; Zeyu Dong; Yu Wu 020; Yingyao Zhou; Duolei Wang; Songsirou Xing; Chichun Zhou 001; Da Shen (CoRR, 2025)