TIWMFLP: Two-Tier Interactive Weighted Matrix Factorization and Label Propagation Based on Similarity Matrix Fusion for Drug-Disease Association Prediction. - Tiyao Liu; Shudong Wang; Yuanyuan Zhang 008; Yunyin Li; Yingye Liu; Shiyuan Huang (J. Chem. Inf. Model., 2024)

Graph attention autoencoder model with dual decoder for clustering single-cell RNA sequencing data. - Shudong Wang; Yu Zhang; Yuanyuan Zhang 008; Yulin Zhang; Shanchen Pang; Jionglong Su; Yingye Liu (Appl. Intell., 2024)

Deciphering circRNA-drug sensitivity associations via global-local heterogeneous matrix factorization and hypergraph contrastive learning. - Tiyao Liu; Shudong Wang; Yuanyuan Zhang 008; Shanchen Pang; Wenjing Yin; Wenhao Wu; Yingye Liu (Expert Syst. Appl., 2025)

IRPCA: An Interpretable Robust Principal Component Analysis Framework for Inferring miRNA-Drug Associations. - Yunyin Li; Shudong Wang; Yuanyuan Zhang 008; Chuanru Ren; Tiyao Liu; Yingye Liu; Shanchen Pang (J. Chem. Inf. Model., 2025)