Small Target Recognition and Tracking Based on UAV Platform. - Xiangrui Tian; Yinjun Jia; Xin Luo; Jie Yin (Sensors, 2022)

DrugCLIP: Contrasive Protein-Molecule Representation Learning for Virtual Screening. - Bowen Gao; Bo Qiang; Haichuan Tan; Yinjun Jia; Minsi Ren; Minsi Lu; Jingjing Liu; Wei-Ying Ma; Yanyan Lan (NeurIPS, 2023)

DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening. - Bowen Gao; Bo Qiang; Haichuan Tan; Minsi Ren; Yinjun Jia; Minsi Lu; Jingjing Liu; Wei-Ying Ma; Yanyan Lan (CoRR, 2023)

Protein-ligand binding representation learning from fine-grained interactions. - Shikun Feng; Minghao Li; Yinjun Jia; Wei-Ying Ma; Yanyan Lan (ICLR, 2024)

Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment. - Bowen Gao; Yinjun Jia; Yuanle Mo; Yuyan Ni; Wei-Ying Ma; Zhi-Ming Ma; Yanyan Lan (ICLR, 2024)

Full-Atom Peptide Design with Geometric Latent Diffusion. - Xiangzhe Kong; Yinjun Jia; Wenbing Huang 001; Yang Liu 005 (NeurIPS, 2024)

Multi-UAV Reconnaissance Task Allocation in 3D Urban Environments. - Xiangrui Tian; Tong Xu; Xin Luo; Yinjun Jia; Jie Yin (IEEE Access, 2024)

Multi-level Interaction Modeling for Protein Mutational Effect Prediction. - Yuanle Mo; Xin Hong; Bowen Gao; Yinjun Jia; Yanyan Lan (CoRR, 2024)

SIU: A Million-Scale Structural Small Molecule-Protein Interaction Dataset for Unbiased Bioactivity Prediction. - Yanwen Huang; Bowen Gao; Yinjun Jia; Hongbo Ma; Wei-Ying Ma; Ya-Qin Zhang; Yanyan Lan (CoRR, 2024)

MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis. - Shikun Feng; Jiaxin Zheng; Yinjun Jia; Yanwen Huang; Fengfeng Zhou; Wei-Ying Ma; Yanyan Lan (CoRR, 2024)

Redefining the task of Bioactivity Prediction. - Yanwen Huang; Bowen Gao; Yinjun Jia; Hongbo Ma; Wei-Ying Ma; Ya-Qin Zhang; Yanyan Lan (ICLR, 2025)

Manipulating 3D Molecules in a Fixed-Dimensional SE(3)-Equivariant Latent Space. - Zitao Chen; Yinjun Jia; Zitong Tian; Wei-Ying Ma; Yanyan Lan (CoRR, 2025)

AANet: Virtual Screening under Structural Uncertainty via Alignment and Aggregation. - Wenyu Zhu; Jianhui Wang; Bowen Gao; Yinjun Jia; Haichuan Tan; Ya-Qin Zhang; Wei-Ying Ma; Yanyan Lan (CoRR, 2025)