Modelling Prostate Gland Motion for Image-Guided Interventions. - Yipeng Hu; Dominic Morgan; Hashim Uddin Ahmed; Doug Pendsé; Mahua Sahu; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (ISBMS, 2008)

A Statistical Motion Model Based on Biomechanical Simulations for Data Fusion during Image-Guided Prostate Interventions. - Yipeng Hu; Dominic Morgan; Hashim Uddin Ahmed; Doug Pendsé; Mahua Sahu; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (MICCAI (1), 2008)

MR to Ultrasound Image Registration for Guiding Prostate Biopsy and Interventions. - Yipeng Hu; Hashim Uddin Ahmed; Clare Allen; Doug Pendsé; Mahua Sahu; Mark Emberton; David J. Hawkes; Dean C. Barratt (MICCAI (1), 2009)

Deformable Vessel-Based Registration Using Landmark-Guided Coherent Point Drift. - Yipeng Hu; Erik-Jan Rijkhorst; Richard Manber; David J. Hawkes; Dean C. Barratt (MIAR, 2010)

Modelling Prostate Motion for Data Fusion During Image-Guided Interventions. - Yipeng Hu; Timothy J. Carter; Hashim Uddin Ahmed; Mark Emberton; Clare Allen; David J. Hawkes; Dean C. Barratt (IEEE Trans. Medical Imaging, 2011)

MR to ultrasound registration for image-guided prostate interventions. - Yipeng Hu; Hashim Uddin Ahmed; Zeike A. Taylor; Clare Allen; Mark Emberton; David J. Hawkes; Dean C. Barratt (Medical Image Anal., 2012)

Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension. - Holger Roth; Jamie McClelland; Thomas Hampshire; Darren Boone; Yipeng Hu; Marc Modat; Hui Zhang 005; Sébastien Ourselin; Steve Halligan; David J. Hawkes (Abdominal Imaging, 2013)

Surface-based prostate registration with biomechanical regularization. - Wendy J. M. van de Ven; Yipeng Hu; Jelle O. Barentsz; Nico Karssemeijer; Dean C. Barratt; Henkjan J. Huisman (Image-Guided Procedures, 2013)

Hybrid Decision Forests for Prostate Segmentation in Multi-channel MR Images. - Qinquan Gao; Akshay Asthana; Tong Tong 001; Yipeng Hu; Daniel Rueckert; Philip J. Edwards (ICPR, 2014)

NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics. - Stian Flage Johnsen; Zeike A. Taylor; Matthew J. Clarkson; John H. Hipwell; Marc Modat; Björn Eiben; Lianghao Han; Yipeng Hu; Thomy Mertzanidou; David J. Hawkes; Sébastien Ourselin (Int. J. Comput. Assist. Radiol. Surg., 2015)

Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics. - Stian Flage Johnsen; Zeike A. Taylor; Lianghao Han; Yipeng Hu; Matthew J. Clarkson; David J. Hawkes; Sébastien Ourselin (Int. J. Comput. Assist. Radiol. Surg., 2015)

Population-based prediction of subject-specific prostate deformation for MR-to-ultrasound image registration. - Yipeng Hu; Eli Gibson; Hashim Uddin Ahmed; Caroline M. Moore; Mark Emberton; Dean C. Barratt (Medical Image Anal., 2015)

Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. - Ester Bonmati; Yipeng Hu; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (CARE@MICCAI, 2016)

2D-3D Registration Accuracy Estimation for Optimised Planning of Image-Guided Pancreatobiliary Interventions. - Yipeng Hu; Ester Bonmati; Eli Gibson; John H. Hipwell; David J. Hawkes; Steven Bandula; Stephen P. Pereira; Dean C. Barratt (MICCAI (1), 2016)

Impact of region contouring variability on image-based focal therapy evaluation. - Eli Gibson; Ian A. Donaldson; Taimur T. Shah; Yipeng Hu; Hashim Uddin Ahmed; Dean C. Barratt (Image-Guided Procedures, 2016)

Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (MICCAI (1), 2017)

Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks. - Yipeng Hu; Eli Gibson; Li-Lin Lee; Weidi Xie; Dean C. Barratt; Tom Vercauteren; J. Alison Noble (CMMI/RAMBO/SWITCH@MICCAI, 2017)

Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. - Yipeng Hu; Eli Gibson; Tom Vercauteren; Hashim Uddin Ahmed; Mark Emberton; Caroline M. Moore; J. Alison Noble; Dean C. Barratt (MICCAI (2), 2017)

NiftyNet: a deep-learning platform for medical imaging. - Eli Gibson; Wenqi Li 001; Carole H. Sudre; Lucas Fidon; Dzhoshkun I. Shakir; Guotai Wang; Zach Eaton-Rosen; Robert J. Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; et al. (CoRR, 2017)

Label-driven weakly-supervised learning for multimodal deformable image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (CoRR, 2017)

Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (CoRR, 2017)

Designing image segmentation studies: Statistical power, sample size and reference standard quality. - Eli Gibson; Yipeng Hu; Henkjan J. Huisman; Dean C. Barratt (Medical Image Anal., 2017)

Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. - Yipeng Hu; Veeru Kasivisvanathan; Lucy A. M. Simmons; Matthew J. Clarkson; Stephen A. Thompson; Taimur T. Shah; Hashim Uddin Ahmed; Shonit Punwani; David J. Hawkes; Mark Emberton; Caroline M. Moore; Dean C. Barratt (IEEE Trans. Biomed. Eng., 2017)

Label-driven weakly-supervised learning for multimodal deformarle image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; J. Alison Noble; Dean C. Barratt; Tom Vercauteren (ISBI, 2018)

Inter-site Variability in Prostate Segmentation Accuracy Using Deep Learning. - Eli Gibson; Yipeng Hu; Nooshin Ghavami; Hashim Uddin Ahmed; Caroline M. Moore; Mark Emberton; Henkjan J. Huisman; Dean C. Barratt (MICCAI (4), 2018)

Adversarial Deformation Regularization for Training Image Registration Neural Networks. - Yipeng Hu; Eli Gibson; Nooshin Ghavami; Ester Bonmati; Caroline M. Moore; Mark Emberton; Tom Vercauteren; J. Alison Noble; Dean C. Barratt (MICCAI (1), 2018)

Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network. - Ester Bonmati; Yipeng Hu; Nikhil Sindhwani; Hans Peter Dietz; Jan D'hooge; Dean C. Barratt; Jan Deprest; Tom Vercauteren (Image-Guided Procedures, 2018)

Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks. - Nooshin Ghavami; Yipeng Hu; Ester Bonmati; Rachael Rodell; Eli Gibson; Caroline M. Moore; Dean C. Barratt (Image-Guided Procedures, 2018)

Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. - Ester Bonmati; Yipeng Hu; Eli Gibson; Laura Uribarri; Geri Keane; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2018)

NiftyNet: a deep-learning platform for medical imaging. - Eli Gibson; Wenqi Li 001; Carole H. Sudre; Lucas Fidon; Dzhoshkun I. Shakir; Guotai Wang; Zach Eaton-Rosen; Robert J. Gray; Tom Doel; Yipeng Hu; Tom Whyntie; Parashkev Nachev; et al. (Comput. Methods Programs Biomed., 2018)

Weakly-supervised convolutional neural networks for multimodal image registration. - Yipeng Hu; Marc Modat; Eli Gibson; Wenqi Li 001; Nooshin Ghavami; Ester Bonmati; Guotai Wang; Steven Bandula; Caroline M. Moore; Mark Emberton; Sébastien Ourselin; J. Alison Noble; et al. (Medical Image Anal., 2018)

Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. - Eli Gibson; Francesco Giganti; Yipeng Hu; Ester Bonmati; Steve Bandula; Kurinchi Gurusamy; Brian R. Davidson; Stephen P. Pereira; Matthew J. Clarkson; Dean C. Barratt (IEEE Trans. Medical Imaging, 2018)

More Unlabelled Data or Label More Data? A Study on Semi-supervised Laparoscopic Image Segmentation. - Yunguan Fu; Maria R. Robu; Bongjin Koo; Crispin Schneider; Stijn van Laarhoven; Danail Stoyanov; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (DART/MIL3ID@MICCAI, 2019)

Conditional Segmentation in Lieu of Image Registration. - Yipeng Hu; Eli Gibson; Dean C. Barratt; Mark Emberton; J. Alison Noble; Tom Vercauteren (MICCAI (2), 2019)

Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration. - Nooshin Ghavami; Yipeng Hu; Eli Gibson; Ester Bonmati; Mark Emberton; Caroline M. Moore; Dean C. Barratt (Medical Image Anal., 2019)

Multimodality Biomedical Image Registration Using Free Point Transformer Networks. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (ASMUS/PIPPI@MICCAI, 2020)

Cross-Device Cross-Anatomy Adaptation Network for Ultrasound Video Analysis. - Qingchao Chen; Yang Liu 105; Yipeng Hu; Alice Self; Aris T. Papageorghiou; J. Alison Noble (ASMUS/PIPPI@MICCAI, 2020)

An Unsupervised Approach to Ultrasound Elastography with End-to-end Strain Regularisation. - Rémi Delaunay; Yipeng Hu; Tom Vercauteren (MICCAI (3), 2020)

Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification. - Alex Grimwood; Helen McNair; Yipeng Hu; Ester Bonmati; Dean C. Barratt; Emma J. Harris (MICCAI (3), 2020)

Prostate Motion Modelling Using Biomechanically-Trained Deep Neural Networks on Unstructured Nodes. - Shaheer U. Saeed; Zeike A. Taylor; Mark A. Pinnock; Mark Emberton; Dean C. Barratt; Yipeng Hu (MICCAI (4), 2020)

Longitudinal Image Registration with Temporal-Order and Subject-Specificity Discrimination. - Qianye Yang; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Qingchao Chen; J. Alison Noble; Tom Vercauteren; Dean C. Barratt; Yipeng Hu (MICCAI (3), 2020)

Introduction to Medical Image Registration with DeepReg, Between Old and New. - Nina Montaña Brown; Yunguan Fu; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alex Grimwood; Zhe Min; Ester Bonmati; Tom Vercauteren; Matthew J. Clarkson; et al. (CoRR, 2020)

DeepReg: a deep learning toolkit for medical image registration. - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (J. Open Source Softw., 2020)

The challenges of deploying artificial intelligence models in a rapidly evolving pandemic. - Yipeng Hu; Joseph Jacob; Geoffrey J. M. Parker; David J. Hawkes; John R. Hurst; Danail Stoyanov (Nat. Mach. Intell., 2020)

DeepReg: a deep learning toolkit for medical image registration. - Yunguan Fu; Nina Montaña Brown; Shaheer U. Saeed; Adrià Casamitjana; Zachary M. C. Baum; Rémi Delaunay; Qianye Yang; Alexander Grimwood; Zhe Min; Stefano B. Blumberg; Juan Eugenio Iglesias; Dean C. Barratt; et al. (Zenodo, 2020)

Few-shot Semantic Segmentation with Self-supervision from Pseudo-classes. - Yiwen Li; Gratianus Wesley Putra Data; Yunguan Fu; Yipeng Hu; Victor Adrian Prisacariu (BMVC, 2021)

Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. - Shaheer U. Saeed; Yunguan Fu; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Dean C. Barratt; Yipeng Hu (IPMI, 2021)

Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. - Qianye Yang; Tom Vercauteren; Yunguan Fu; Francesco Giganti; Nooshin Ghavami; Vasilis Stavrinides; Caroline M. Moore; Matthew J. Clarkson; Dean C. Barratt; Yipeng Hu (ISBI, 2021)

Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels. - Liam F. Chalcroft; Jiongqi Qu; Sophie A. Martin; Iani J. M. B. Gayo; Giulio V. Minore; Imraj R. D. Singh; Shaheer U. Saeed; Qianye Yang; Zachary M. C. Baum; André Altmann; Yipeng Hu (ASMUS@MICCAI, 2021)

Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. - Alexander Grimwood; João Ramalhinho; Zachary M. C. Baum; Nina Montaña Brown; Gavin J. Johnson; Yipeng Hu; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt; Ester Bonmati (ASMUS@MICCAI, 2021)

Lung Ultrasound Segmentation and Adaptation Between COVID-19 and Community-Acquired Pneumonia. - Harry Mason; Lorenzo Cristoni; Andrew Walden; Roberto Lazzari; Thomas Pulimood; Louis Grandjean; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu; Zachary M. C. Baum (ASMUS@MICCAI, 2021)

Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (ASMUS@MICCAI, 2021)

Learning to Address Intra-segment Misclassification in Retinal Imaging. - Yukun Zhou; Moucheng Xu; Yipeng Hu; Hongxiang Lin; Joseph Jacob; Pearse A. Keane; Daniel C. Alexander (MICCAI (1), 2021)

Image quality assessment for closed-loop computer-assisted lung ultrasound. - Zachary M. C. Baum; Ester Bonmati; Lorenzo Cristoni; Andrew Walden; Ferran Prados; Baris Kanber; Dean C. Barratt; David J. Hawkes; Geoff J. M. Parker; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu (Image-Guided Procedures, 2021)

End-to-end forecasting of needle trajectory in percutaneous ablation. - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Image-Guided Procedures, 2021)

Combined 3D super-resolution, de-noising and partial volume correction for percutaneous ablation. - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Image Processing, 2021)

Controlling False Positive/Negative Rates for Deep-Learning-Based Prostate Cancer Detection on Multiparametric MR Images. - Zhe Min; Fernando J. Bianco; Qianye Yang; Rachael Rodell; Wen Yan; Dean C. Barratt; Yipeng Hu (MIUA, 2021)

Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver. - Nina Montaña Brown; João Ramalhinho; Moustafa Allam; Brian R. Davidson; Yipeng Hu; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2021)

Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (CoRR, 2021)

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease. - Ashkan Pakzad; Wing Keung Cheung; Kin Quan; Nesrin Mogulkoc; Coline H. M. Van Moorsel; Brian J. Bartholmai; Hendrik W. Van Es; Alper Ezircan; Frouke Van Beek; Marcel Veltkamp; Ronald A. Karwoski; Tobias Peikert; et al. (CoRR, 2021)

Real-time multimodal image registration with partial intraoperative point-set data. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (Medical Image Anal., 2021)

AI reflections in 2020. - Anna Jobin; Kingson Man; Antonio Damasio; Georgios Kaissis; Rickmer Braren; Julia Stoyanovich; Jay J. Van Bavel; Tessa V. West; Brent D. Mittelstadt 002; Jason Eshraghian; Marta R. Costa-jussà; Asaf Tzachor; et al. (Nat. Mach. Intell., 2021)

FEW-SHOT Image Segmentation for Cross-Institution Male Pelvic Organs Using Registration-Assisted Prototypical Learning. - Yiwen Li; Yunguan Fu; Qianye Yang; Zhe Min; Wen Yan; Henkjan J. Huisman; Dean C. Barratt; Victor Adrian Prisacariu; Yipeng Hu (ISBI, 2022)

Optimising Chest X-Rays for Image Analysis by Identifying and Removing Confounding Factors. - Shahab Aslani; Watjana Lilaonitkul; Vaishnavi Gnanananthan; Divya Raj; Bojidar Rangelov; Alexandra L. Young; Yipeng Hu; Paul Taylor; Daniel C. Alexander; Joseph Jacob (MICAD, 2022)

Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (ASMUS@MICCAI, 2022)

Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data. - Zachary M. C. Baum; Tamas Ungi; Christopher Schlenger; Yipeng Hu; Dean C. Barratt (ASMUS@MICCAI, 2022)

Towards Multi-modal Self-supervised Video and Ultrasound Pose Estimation for Laparoscopic Liver Surgery. - Nina Montaña Brown; João Ramalhinho; Bongjin Koo; Moustafa Allam; Brian R. Davidson; Kurinchi Gurusamy; Yipeng Hu; Matthew J. Clarkson (ASMUS@MICCAI, 2022)

Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. - Iani J. M. B. Gayo; Shaheer U. Saeed; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CaPTion@MICCAI, 2022)

Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction. - Pierre Raillard; Lorenzo Cristoni; Andrew Walden; Roberto Lazzari; Thomas Pulimood; Louis Grandjean; Claudia A. M. Gandini Wheeler-Kingshott; Yipeng Hu; Zachary M. C. Baum (ASMUS@MICCAI, 2022)

Collaborative Quantization Embeddings for Intra-subject Prostate MR Image Registration. - Ziyi Shen; Qianye Yang; Yuming Shen; Francesco Giganti; Vasilis Stavrinides; Richard E. Fan; Caroline M. Moore; Mirabela Rusu; Geoffrey A. Sonn; Philip H. S. Torr; Dean C. Barratt; Yipeng Hu (MICCAI (6), 2022)

Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi-supervised Segmentation. - Mou-Cheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (MICCAI (5), 2022)

The Impact of Using Voxel-Level Segmentation Metrics on Evaluating Multifocal Prostate Cancer Localisation. - Wen Yan; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; Dean C. Barratt; Bernard Chiu; Yipeng Hu (AMAI@MICCAI, 2022)

Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. - João Ramalhinho; Bongjin Koo; Nina Montaña Brown; Shaheer U. Saeed; Ester Bonmati; Kurinchi Gurusamy; Stephen P. Pereira; Brian R. Davidson; Yipeng Hu; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2022)

Task model-specific operator skill assessment in routine fetal ultrasound scanning. - Yipei Wang; Qianye Yang; Lior Drukker; Aris T. Papageorghiou; Yipeng Hu; J. Alison Noble (Int. J. Comput. Assist. Radiol. Surg., 2022)

Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. - Shaheer U. Saeed; Wen Yan; Yunguan Fu; Francesco Giganti; Qianye Yang; Zachary M. C. Baum; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; Mark Emberton; Dean C. Barratt; Yipeng Hu (CoRR, 2022)

VAFO-Loss: VAscular Feature Optimised Loss Function for Retinal Artery/Vein Segmentation. - Yukun Zhou; Moucheng Xu; Yipeng Hu; Stefano B. Blumberg; An Zhao; Siegfried K. Wagner; Pearse A. Keane; Daniel C. Alexander (CoRR, 2022)

MONAI: An open-source framework for deep learning in healthcare. - M. Jorge Cardoso; Wenqi Li 001; Richard Brown 004; Nic Ma; Eric Kerfoot; Yiheng Wang; Benjamin Murray; Andriy Myronenko; Can Zhao 001; Dong Yang 005; Vishwesh Nath; Yufan He; et al. (CoRR, 2022)

Image quality assessment for machine learning tasks using meta-reinforcement learning. - Shaheer U. Saeed; Yunguan Fu; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Mirabela Rusu; Richard E. Fan; Geoffrey A. Sonn; J. Alison Noble; Dean C. Barratt; Yipeng Hu (Medical Image Anal., 2022)

Domain generalization for prostate segmentation in transrectal ultrasound images: A multi-center study. - Sulaiman Vesal; Iani J. M. B. Gayo; Indrani Bhattacharya; Shyam Natarajan; Leonard S. Marks; Dean C. Barratt; Richard E. Fan; Yipeng Hu; Geoffrey A. Sonn; Mirabela Rusu (Medical Image Anal., 2022)

Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. - Ester Bonmati; Yipeng Hu; Alexander Grimwood; Gavin J. Johnson; George Goodchild; Margaret G. Keane; Kurinchi Gurusamy; Brian R. Davidson; Matthew J. Clarkson; Stephen P. Pereira; Dean C. Barratt (IEEE Trans. Medical Imaging, 2022)

Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. - Qianye Yang; David Atkinson; Yunguan Fu; Tom Syer; Wen Yan; Shonit Punwani; Matthew J. Clarkson; Dean C. Barratt; Tom Vercauteren; Yipeng Hu (IEEE Trans. Medical Imaging, 2022)

Cross-institution Male Pelvic Structures. - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan Huisman; et al. (Zenodo, 2022)

Freehand ultrasound without external trackers. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (Zenodo, 2022)

Non-rigid Medical Image Registration using Physics-informed Neural Networks. - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (IPMI, 2023)

Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (ISBI, 2023)

Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation. - Yunguan Fu; Yiwen Li; Shaheer U. Saeed; Matthew J. Clarkson; Yipeng Hu (DGM4MICCAI, 2023)

Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (ASMUS@MICCAI, 2023)

PLD-AL: Pseudo-label Divergence-Based Active Learning in Carotid Intima-Media Segmentation for Ultrasound Images. - Yucheng Tang; Yipeng Hu; Jing Li; Hu Lin; Xiang Xu; Ke Huang; Hongxiang Lin (MICCAI (2), 2023)

Spatial Correspondence between Graph Neural Network-Segmented Images. - Qian Li 036; Yunguan Fu; Qianye Yang; Zhijiang Du; Hongjian Yu; Yipeng Hu (MIDL, 2023)

Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. - Shaheer U. Saeed; Tom Syer; Wen Yan; Qianye Yang; Mark Emberton; Shonit Punwani; Matthew John Clarkson; Dean C. Barratt; Yipeng Hu (MIDL, 2023)

Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. - Weixi Yi; Vasilis Stavrinides; Zachary M. C. Baum; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (MLMI@MICCAI (1), 2023)

SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. - Nina Montaña Brown; Shaheer U. Saeed; Ahmed Abdulaal; Thomas Dowrick; Yakup Kilic; Sophie Wilkinson; Jack Gao; Meghavi Mashar; Chloe He 002; Alkisti Stavropoulou; Emma Thomson; Zachary M. C. Baum; et al. (NeurIPS, 2023)

Multi-phase synthetic contrast enhancement in interventional computed tomography for guiding renal cryotherapy. - Mark A. Pinnock; Yipeng Hu; Steve Bandula; Dean C. Barratt (Int. J. Comput. Assist. Radiol. Surg., 2023)

Expectation Maximization Pseudo Labelling for Segmentation with Limited Annotations. - Mou-Cheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (CoRR, 2023)

A data-centric deep learning approach to airway segmentation. - Wing Keung Cheung; Ashkan Pakzad; Nesrin Mogulkoc; Sarah Needleman; Bojidar Rangelov; Eyjolfur Gudmundsson; An Zhao; Mariam Abbas; Davina McLaverty; Dimitrios Asimakopoulos; Robert Chapman; Recep Savas; et al. (CoRR, 2023)

A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models. - Yunguan Fu; Yiwen Li; Shaheer U. Saeed; Matthew J. Clarkson; Yipeng Hu (CoRR, 2023)

Meta-Learning Initializations for Interactive Medical Image Registration. - Zachary M. C. Baum; Yipeng Hu; Dean C. Barratt (IEEE Trans. Medical Imaging, 2023)

Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Henkjan Huisman; et al. (Medical Image Anal., 2023)

Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images. - Martynas Pocius; Wen Yan; Dean C. Barratt; Mark Emberton; Matthew J. Clarkson; Yipeng Hu; Shaheer U. Saeed (ISBI, 2024)

One Registration is Worth Two Segmentations. - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (MICCAI (12), 2024)

Nonrigid Reconstruction of Freehand Ultrasound Without a Tracker. - Qi Li 030; Ziyi Shen; Qianye Yang; Dean C. Barratt; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (MICCAI (4), 2024)

Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. - Zhe Min; Zachary M. C. Baum; Shaheer U. Saeed; Mark Emberton; Dean C. Barratt; Zeike A. Taylor; Yipeng Hu (MICCAI (2), 2024)

Poisson Ordinal Network for Gleason Group Estimation Using Bi-Parametric MRI. - Yinsong Xu 002; Yipei Wang; Ziyi Shen; Iani J. M. B. Gayo; Natasha Thorley; Shonit Punwani; Aidong Men; Dean C. Barratt; Qingchao Chen; Yipeng Hu (MICCAI (5), 2024)

Segmentation by Registration-Enabled SAM Prompt Engineering Using Five Reference Images. - Yaxi Chen; Aleksandra Ivanova; Shaheer U. Saeed; Rikin Hargunani; Jie Huang; Chaozong Liu; Yipeng Hu (WBIR, 2024)

Semi-weakly-supervised neural network training for medical image registration. - Yiwen Li; Yunguan Fu; Iani J. M. B. Gayo; Qianye Yang; Zhe Min; Shaheer U. Saeed; Wen Yan; Yipei Wang; J. Alison Noble; Mark Emberton; Matthew J. Clarkson; Dean C. Barratt; et al. (CoRR, 2024)

Competing for pixels: a self-play algorithm for weakly-supervised segmentation. - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (CoRR, 2024)

Subspace Optimization for Large Language Models with Convergence Guarantees. - Yutong He; Pengrui Li; Yipeng Hu; Chuyan Chen; Kun Yuan 001 (CoRR, 2024)

SAMReg: SAM-enabled Image Registration with ROI-based Correspondence. - Shiqi Huang; Tingfa Xu; Ziyi Shen; Shaheer Ullah Saeed; Wen Yan; Dean C. Barratt; Yipeng Hu (CoRR, 2024)

AI-assisted prostate cancer detection and localisation on biparametric MR by classifying radiologist-positives. - Xiangcen Wu; Yipei Wang; Qianye Yang; Natasha Thorley; Shonit Punwani; Veeru Kasivisvanathan; Ester Bonmati; Yipeng Hu (CoRR, 2024)

Active learning using adaptable task-based prioritisation. - Shaheer U. Saeed; João Ramalhinho; Mark A. Pinnock; Ziyi Shen; Yunguan Fu; Nina Montaña Brown; Ester Bonmati; Dean C. Barratt; Stephen P. Pereira; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu (Medical Image Anal., 2024)

Expectation maximisation pseudo labels. - Moucheng Xu; Yukun Zhou; Chen Jin; Marius de Groot; Daniel C. Alexander; Neil P. Oxtoby; Yipeng Hu; Joseph Jacob (Medical Image Anal., 2024)

CF-Loss: Clinically-relevant feature optimised loss function for retinal multi-class vessel segmentation and vascular feature measurement. - Yukun Zhou; Moucheng Xu; Yipeng Hu; Stefano B. Blumberg; An Zhao; Siegfried K. Wagner; Pearse A. Keane; Daniel C. Alexander (Medical Image Anal., 2024)

Combiner and HyperCombiner networks: Rules to combine multimodality MR images for prostate cancer localisation. - Wen Yan; Bernard Chiu; Ziyi Shen; Qianye Yang; Tom Syer; Zhe Min; Shonit Punwani; Mark Emberton; David Atkinson; Dean C. Barratt; Yipeng Hu (Medical Image Anal., 2024)

Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. - Qi Li 030; Ziyi Shen; Qian Li 036; Dean C. Barratt; Thomas Dowrick; Matthew J. Clarkson; Tom Vercauteren; Yipeng Hu (IEEE Trans. Biomed. Eng., 2024)

The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy. - Iani J. M. B. Gayo; Shaheer U. Saeed; Ester Bonmati; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (Int. J. Comput. Assist. Radiol. Surg., 2024)

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease. - Ashkan Pakzad; Wing Keung Cheung; Coline H. M. Van Moorsel; Kin Quan; Nesrin Mogulkoc; Brian J. Bartholmai; H. W. Van Es; Alper Ezircan; Frouke Van Beek; Marcel Veltkamp; Ronald A. Karwoski; T. Peikert; et al. (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2024)

Interpolation-split: a data-centric deep learning approach with big interpolated data to boost airway segmentation performance. - Wing Keung Cheung; Ashkan Pakzad; Nesrin Mogulkoc; Sarah Needleman; Bojidar Rangelov; Eyjolfur Gudmundsson; An Zhao; Mariam Abbas; Davina McLaverty; Dimitrios Asimakopoulos; Robert Chapman; Recep Savas; et al. (J. Big Data, 2024)

A Deep Learning Framework for Fetal Heart Tracking in Ultrasound Videos: Toward Enhanced Congenital Heart Defects Detection. - Qianye Yang; Kangning Cui; Yipeng Hu; Can Peng; Netzahualcoyotl Hernandez-Cruz; Rahul Ahuja; Elena D'Alberti; Raymond Chan 001; Olga Patey; Aris T. Papageorghiou; J. Alison Noble (FIMH (2), 2025)

Tell2Reg: Establishing Spatial Correspondence between Images by the Same Language Prompts. - Wen Yan; Qianye Yang; Shiqi Huang; Yipei Wang; Shonit Punwani; Mark Emberton; Vasilis Stavrinides; Yipeng Hu; Dean C. Barratt (ISBI, 2025)

T2-Only Prostate Cancer Prediction by Meta-Learning from BI-Parametric MR Imaging. - Weixi Yi; Yipei Wang; Natasha Thorley; Alexander Ng; Shonit Punwani; Veeru Kasivisvanathan; Dean C. Barratt; Shaheer U. Saeed; Yipeng Hu (ISBI, 2025)

Promptable Cancer Segmentation Using Minimal Expert-Curated Data. - Lynn Karam; Yipei Wang; Veeru Kasivisvanathan; Mirabela Rusu; Yipeng Hu; Shaheer U. Saeed (MIUA (3), 2025)

SPARS: Self-Play Adversarial Reinforcement Learning for Segmentation of Liver Tumours. - Catalina Tan; Yipeng Hu; Shaheer U. Saeed (MIUA (3), 2025)

Segmentation versus detection: Development and evaluation of deep learning models for prostate imaging reporting and data system lesions localisation on Bi-parametric prostate magnetic resonance imaging. - Zhe Min; Fernando J. Bianco; Qianye Yang; Wen Yan; Ziyi Shen; David Cohen; Rachael Rodell; Dean C. Barratt; Yipeng Hu (CAAI Trans. Intell. Technol., 2025)

Turbulence control in memristive neural network via adaptive magnetic flux based on DLS-ADMM technique. - Qianming Ding; Yong Wu; Ying Xie; Yipeng Hu; Weifang Huang; Ya Jia (Neural Networks, 2025)

CE-LoRA: Computation-Efficient LoRA Fine-Tuning for Language Models. - Guanduo Chen; Yutong He; Yipeng Hu; Kun Yuan 001; Binhang Yuan (CoRR, 2025)

Competing for Pixels: A Self-Play Algorithm for Weakly-Supervised Semantic Segmentation. - Shaheer U. Saeed; Shiqi Huang; João Ramalhinho; Iani J. M. B. Gayo; Nina Montaña Brown; Ester Bonmati; Stephen P. Pereira; Brian R. Davidson; Dean C. Barratt; Matthew J. Clarkson; Yipeng Hu (IEEE Trans. Pattern Anal. Mach. Intell., 2025)

Patient-specific radiomic feature selection with reconstructed healthy persona of knee MR images. - Yaxi Chen; Simin Ni; Aleksandra Ivanova; Shaheer U. Saeed; Rikin Hargunani; Jie Huang; Chaozong Liu; Yipeng Hu (CoRR, 2025)

CineMA: A Foundation Model for Cine Cardiac MRI. - Yunguan Fu; Weixi Yi; Charlotte Manisty; Anish N. Bhuva; Thomas A. Treibel; James C. Moon; Matthew J. Clarkson; Rhodri H. Davies; Yipeng Hu (CoRR, 2025)

Radiomic fingerprints for knee MR images assessment. - Yaxi Chen; Simin Ni; Shaheer U. Saeed; Aleksandra Ivanova; Rikin Hargunani; Jie Huang; Chaozong Liu; Yipeng Hu (CoRR, 2025)

TUS-REC2024: A Challenge to Reconstruct 3D Freehand Ultrasound Without External Tracker. - Qi Li 030; Shaheer U. Saeed; Yuliang Huang; Mingyuan Luo; Zhongnuo Yan; Jiongquan Chen; Xin Yang 009; Dong Ni 001; Nektarios Winter; Phuc Nguyen; Lucas Steinberger; Caelan Haney; et al. (CoRR, 2025)

Reasoning in machine vision: learning to think fast and slow. - Shaheer U. Saeed; Yipei Wang; Veeru Kasivisvanathan; Brian R. Davidson; Matthew J. Clarkson; Yipeng Hu; Daniel C. Alexander (CoRR, 2025)

A computationally frugal open-source foundation model for thoracic disease detection in lung cancer screening programs. - Niccolò McConnell; Pardeep Vasudev; Daisuke Yamada; Daryl Cheng; Mehran Azimbagirad; John McCabe; Shahab Aslani; Ahmed H. Shahin; Yukun Zhou; SUMMIT Consortium; André Altmann; Yipeng Hu; et al. (CoRR, 2025)

Analysis of Image-and-Text Uncertainty Propagation in Multimodal Large Language Models with Cardiac MR-Based Applications. - Yucheng Tang; Yunguan Fu; Weixi Yi; Yipei Wang; Daniel C. Alexander; Rhodri Davies; Yipeng Hu (CoRR, 2025)