Yiqing Shen

Orcid: 0000-0001-7866-3339

Affiliations:
  • Johns Hopkins University, MD, USA
  • Beijing Infervision Technology Co., Ltd., Beijing, China (former)
  • Shanghai Jiao Tong University, Shanghai, China (former)


According to our database1, Yiqing Shen authored at least 49 papers between 2020 and 2024.

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Bibliography

2024
Radiomic feature reliability of amide proton transfer-weighted MR images acquired with compressed sensing at 3 T.
Int. J. Imaging Syst. Technol., March, 2024

DiffImpute: Tabular Data Imputation With Denoising Diffusion Probabilistic Model.
CoRR, 2024

FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images.
CoRR, 2024

SAM-Lightening: A Lightweight Segment Anything Model with Dilated Flash Attention to Achieve 30 times Acceleration.
CoRR, 2024

A Survey for Foundation Models in Autonomous Driving.
CoRR, 2024

2023
A Hierarchical Graph V-Net With Semi-Supervised Pre-Training for Histological Image Based Breast Cancer Classification.
IEEE Trans. Medical Imaging, December, 2023

Artifact Detection and Restoration in Histology Images With Stain-Style and Structural Preservation.
IEEE Trans. Medical Imaging, December, 2023

Mine local homogeneous representation by interaction information clustering with unsupervised learning in histopathology images.
Comput. Methods Programs Biomed., June, 2023

ClusterSeg: A crowd cluster pinpointed nucleus segmentation framework with cross-modality datasets.
Medical Image Anal., April, 2023

A Federated Learning System for Histopathology Image Analysis With an Orchestral Stain-Normalization GAN.
IEEE Trans. Medical Imaging, 2023

Towards the Unification of Generative and Discriminative Visual Foundation Model: A Survey.
CoRR, 2023

SAM-Med3D.
CoRR, 2023

Tackling Heterogeneity in Medical Federated learning via Vision Transformers.
CoRR, 2023

SCRNet: a Retinex Structure-based Low-light Enhancement Model Guided by Spatial Consistency.
CoRR, 2023

MoViT: Memorizing Vision Transformers for Medical Image Analysis.
CoRR, 2023

Graph Denoising Diffusion for Inverse Protein Folding.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

MoViT: Memorizing Vision Transformers for Medical Image Analysis.
Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023

An Anti-biased TBSRTC-Category Aware Nuclei Segmentation Framework with a Multi-label Thyroid Cytology Benchmark.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

A General Computationally-Efficient 3D Reconstruction Pipeline for Multiple Images with Point Clouds.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

Revisiting Feature Propagation and Aggregation in Polyp Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

StainDiff: Transfer Stain Styles of Histology Images with Denoising Diffusion Probabilistic Models and Self-ensemble.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

TransNuSeg: A Lightweight Multi-task Transformer for Nuclei Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Artifact Restoration in Histology Images with Diffusion Probabilistic Models.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

COVID-19 Pneumonia Classification with Transformer from Incomplete Modalities.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Mixed Sample Augmentation for Online Distillation.
Proceedings of the IEEE International Conference on Acoustics, 2023

HistDeblur: A Pyramid Trustworthy Framework for Blurry Histologic Artifacts Quality Control.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

How GNNs Facilitate CNNs in Mining Geometric Information from Large-Scale Medical Images.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Stain Normalization and Augmentation in Frequency Space for Histology Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Identify Representative Samples by Conditional Random Field of Cancer Histology Images.
IEEE Trans. Medical Imaging, 2022

Sampling Based Tumor Recognition in Whole-Slide Histology Image With Deep Learning Approaches.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Online Distillation with Mixed Sample Augmentation.
CoRR, 2022

RandStainNA: Learning Stain-Agnostic Features from Histology Slides by Bridging Stain Augmentation and Normalization.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

CD<sup>2</sup>-pFed: Cyclic Distillation-guided Channel Decoupling for Model Personalization in Federated Learning.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

Self-Distillation from the Last Mini-Batch for Consistency Regularization.
Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022

Federated Learning for Chronic Obstructive Pulmonary Disease Classification with Partial Personalized Attention Mechanism.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

MFA-DSLNet: Multi-scale Fusion Attention Mechanism with Dual-threshold Self-paced Learning for Pediatric Pneumonia Diagnosis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
A Deep Learning-based Quality Assessment and Segmentation System with a Large-scale Benchmark Dataset for Optical Coherence Tomographic Angiography Image.
CoRR, 2021

Multiple-datasets and multiple-label based color normalization in histopathology with cGAN.
Proceedings of the Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021, 2021

Contrastive Learning Based Stain Normalization Across Multiple Tumor in Histopathology.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

CA<sup>2.5</sup>-Net Nuclei Segmentation Framework with a Microscopy Cell Benchmark Collection.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Style Normalization In Histology With Federated Learning.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Representative Region Based Active Learning For Histological Classification Of Colorectal Cancer.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Su-Sampling Based Active Learning For Large-Scale Histopathology Image.
Proceedings of the 2021 IEEE International Conference on Image Processing, 2021

Cluster Image Patches with Multiple Mutual Information in Unlabelled Whole-Slide Image.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
A Deformable CRF Model for Histopathology Whole-Slide Image Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Fast Tumor Detector in Whole-Slide Image With Dynamic Programing Based Monte Carlo Sampling.
Proceedings of the IEEE International Conference on Image Processing, 2020

A Prediction Model of Microsatellite Status from Histology Images.
Proceedings of the 10th International Conference on Biomedical Engineering and Technology, 2020

Identifying patch-level MSI from histological images of Colorectal Cancer by a Knowledge Distillation Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

A High-Throughput Tumor Location System with Deep Learning for Colorectal Cancer Histopathology Image.
Proceedings of the Artificial Intelligence in Medicine, 2020


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