Graph embedding-based link prediction for literature-based discovery in Alzheimer's Disease. - Yiyuan Pu; Daniel Beck; Karin Verspoor (J. Biomed. Informatics, 2023)

Intervention extraction in preclinical animal studies of Alzheimer's Disease: Enhancing regex performance with language model-based filtering. - Yiyuan Pu; Kaitlyn Hair; Daniel Beck; Mike Conway; Malcolm MacLeod; Karin Verspoor (BioNLP@ACL, 2024)

Enriched knowledge representation in biological fields: a case study of literature-based discovery in Alzheimer's disease. - Yiyuan Pu; Daniel Beck; Karin Verspoor (J. Biomed. Semant., 2025)