A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts. - Yizhi Cai; Brian Hartnett; Claes Gustafsson; Jean Peccoud (Bioinform., 2007)

Modeling the arsenic biosensor system. - Yizhi Cai; Bryony Davidson; Hongwu Ma; Chris French (BMC Syst. Biol., 2007)

Arsenic biosenseor: a step further. - Chris French; Judith Nicholson; Farid Bizzari; Jelena Aleksic; Yizhi Cai; Sreemati Seshasayee; Sergii Ivakhno; Bryony Davidson; Jen Wilson; Kim de Mora; Hongwu Ma; Laszlo Kozma-Bognar; et al. (BMC Syst. Biol., 2007)

Writing DNA with GenoCADTM. - Michael J. Czar; Yizhi Cai; Jean Peccoud (Nucleic Acids Res., 2009)

Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars. - Yizhi Cai; Matthew W. Lux; Laura Adam; Jean Peccoud (PLoS Comput. Biol., 2009)

Whole genome synthesis: from poliovirus to synthetic yeast. - Junbiao Dai; Yizhi Cai; Yinjing Yuan; Huanming Yang; Jef D. Boeke (Quant. Biol., 2017)

Recent technology advancements in large-scale DNA assembly. - Jielin Li; Li Cheng; Yingxin Ma; Yizhi Cai; Junbiao Dai (Quant. Biol., 2025)