Evolution under Reversals: Parsimony and Conservation of Common Intervals. - Yoan Diekmann; Marie-France Sagot; Eric Tannier (IEEE ACM Trans. Comput. Biol. Bioinform., 2007)

Thousands of Rab GTPases for the Cell Biologist. - Yoan Diekmann; Elsa Seixas; Marc Gouw; Filipe Tavares-Cadete; Miguel C. Seabra; José B. Pereira-Leal (PLoS Comput. Biol., 2011)

Rabifier2: an improved bioinformatic classifier of Rab GTPases. - Jaroslaw Surkont; Yoan Diekmann; José B. Pereira-Leal (Bioinform., 2017)

Identifying Maximal Perfect Haplotype Blocks. - Luís Felipe I. Cunha; Yoan Diekmann; Luis A. B. Kowada; Jens Stoye (BSB, 2018)

AutArch: An AI-assisted workflow for object detection and automated recording in archaeological catalogues. - Kevin Klein 003; Alyssa Wohde; Alexander V. Gorelik; Volker Heyd; Yoan Diekmann; Maxime Brami (CoRR, 2023)