Reconstruction conjointe de l'ordre des gènes de génomes actuels et ancestraux et de leur évolution structurale dans un cadre phylogénétique. (Joint reconstruction of ancestral and extant genome structure in a phylogenetic framework). - Yoann Anselmetti (2017)

Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. - Yoann Anselmetti; Wandrille Duchemin; Eric Tannier; Cédric Chauve; Sèverine Bérard (BMC Genom., 2018)

Gene tree and species tree reconciliation with endosymbiotic gene transfer. - Yoann Anselmetti; Nadia El-Mabrouk; Manuel Lafond; Aïda Ouangraoua (Bioinform., 2021)

Reconciliation with Segmental Duplication, Transfer, Loss and Gain. - Yoann Anselmetti; Mattéo Delabre; Nadia El-Mabrouk (RECOMB-CG, 2022)

Median and small parsimony problems on RNA trees. - Bertrand Marchand; Yoann Anselmetti; Manuel Lafond; Aïda Ouangraoua (Bioinform., 2024)