Using DNA microarrays to study gene expression in closely related species. - Alicia Oshlack; Adrien E. Chabot; Gordon K. Smyth; Yoav Gilad (Bioinform., 2007)

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. - Jacob F. Degner; John C. Marioni; Athma A. Pai; Joseph K. Pickrell; Everlyne Nkadori; Yoav Gilad; Jonathan K. Pritchard (Bioinform., 2009)

False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions. - Joseph K. Pickrell; Daniel J. Gaffney; Yoav Gilad; Jonathan K. Pritchard (Bioinform., 2011)