Data mining tools for the Saccharomyces cerevisiae morphological database. - Taro L. Saito; Jun Sese; Yoichiro Nakatani; Fumi Sano; Masashi Yukawa; Yoshikazu Ohya; Shinichi Morishita (Nucleic Acids Res., 2005)

UTGB/medaka: genomic resource database for medaka biology. - Budrul Ahsan; Daisuke Kobayashi; Tomoyuki Yamada; Masahiro Kasahara; Shin Sasaki; Taro L. Saito; Yukinobu Nagayasu; Koichiro Doi; Yoichiro Nakatani; Wei Qu; Tomoko Jindo; Atsuko Shimada; et al. (Nucleic Acids Res., 2008)

Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes. - Yoichiro Nakatani; Aoife McLysaght (Bioinform., 2017)