Gene bi-targeting by viral and human miRNAs. - Isana Veksler-Lublinsky; Yonat Shemer-Avni; Klara Kedem; Michal Ziv-Ukelson (BMC Bioinform., 2010)

Bioinformatic Analysis of the Neutrality of RNA Secondary Structure Elements across genotypes reveals Evidence for Direct Evolution of Genetic Robustness in HCV. - Alexander Churkin; Moriah Cohen; Yonat Shemer-Avni; Danny Barash (J. Bioinform. Comput. Biol., 2010)

Finding quasi-modules of human and viral miRNAs: a case study of human cytomegalovirus (HCMV). - Isana Veksler-Lublinsky; Yonat Shemer-Avni; Eti Meiri; Zvi Bentwich; Klara Kedem; Michal Ziv-Ukelson (BMC Bioinform., 2012)

GO for Integration of Expression Data. - Dikla Dotan-Cohen; Dana Moonshine; Moshe Natan; Yonat Shemer-Avni; Avraham A. Melkman (Silico Biol., 2012)

Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-viral Infection Patterns. - Ilan Y. Smoly; Amir Carmel; Yonat Shemer-Avni; Esti Yeger Lotem; Michal Ziv-Ukelson (J. Comput. Biol., 2016)