On the predictive power of sequence similarity in yeast. - Yonatan Bilu; Michal Linial (RECOMB, 2001)

Functional Consequences in Metabolic Pathways from Phylogenetic Profiles. - Yonatan Bilu; Michal Linial (WABI, 2002)

A Gap in Average Proof Complexity - Eli Ben-Sasson; Yonatan Bilu (Electron. Colloquium Comput. Complex., 2002)

The Advantage of Functional Prediction Based on Clustering of Yeast Genes and Its Correlation with Non-Sequence Based Classifications. - Yonatan Bilu; Michal Linial (J. Comput. Biol., 2002)

ProtoNet: hierarchical classification of the protein space. - Ori Sasson; Avishay Vaaknin; Hillel Fleischer; Elon Portugaly; Yonatan Bilu; Nathan Linial; Michal Linial (Nucleic Acids Res., 2003)

Constructing Expander Graphs by 2-Lifts and Discrepancy vs. Spectral Gap. - Yonatan Bilu; Nathan Linial (FOCS, 2004)

Ramanujan Signing of Regular Graphs. - Yonatan Bilu; Nathan Linial (Comb. Probab. Comput., 2004)

On codes from hypergraphs. - Yonatan Bilu; Shlomo Hoory (Eur. J. Comb., 2004)

Monotone maps, sphericity and bounded second eigenvalue. - Yonatan Bilu; Nathan Linial (J. Comb. Theory B, 2005)

Lifts, Discrepancy and Nearly Optimal Spectral Gap*. - Yonatan Bilu; Nathan Linial (Comb., 2006)

Tales of Hoffman: Three extensions of Hoffman's bound on the graph chromatic number. - Yonatan Bilu (J. Comb. Theory B, 2006)

Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States. - Yonatan Bilu; Tomer Shlomi; Naama Barkai; Eytan Ruppin (PLoS Comput. Biol., 2006)

Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons. - Yonatan Bilu; Pankaj K. Agarwal; Rachel Kolodny (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

Are stable instances easy? - Yonatan Bilu; Nathan Linial (Electron. Colloquium Comput. Complex., 2009)

On the practically interesting instances of MAXCUT. - Yonatan Bilu; Amit Daniely; Nati Linial; Michael E. Saks (STACS, 2013)

Context Dependent Claim Detection. - Ran Levy 001; Yonatan Bilu; Daniel Hershcovich; Ehud Aharoni; Noam Slonim (COLING, 2014)

Claims on demand - an initial demonstration of a system for automatic detection and polarity identification of context dependent claims in massive corpora. - Noam Slonim; Ehud Aharoni; Carlos Alzate; Roy Bar-Haim; Yonatan Bilu; Lena Dankin; Iris Eiron; Daniel Hershcovich; Shay Hummel; Mitesh M. Khapra; Tamar Lavee; Ran Levy 001; et al. (COLING (Demos), 2014)

Automatic Claim Negation: Why, How and When. - Yonatan Bilu; Daniel Hershcovich; Noam Slonim (ArgMining@HLT-NAACL, 2015)

Claim Synthesis via Predicate Recycling. - Yonatan Bilu; Noam Slonim (ACL (2), 2016)

Computational Argumentation Quality Assessment in Natural Language. - Henning Wachsmuth; Nona Naderi; Yufang Hou 001; Yonatan Bilu; Vinodkumar Prabhakaran; Tim Alberdingk Thijm; Graeme Hirst; Benno Stein 001 (EACL (1), 2017)

Dagstuhl-15512-ArgQuality. - Henning Wachsmuth; Nona Naderi; Yufang Hou 001; Yonatan Bilu; Vinodkumar Prabhakaran; Tim Alberdingk Thijm; Graeme Hirst; Benno Stein 001 (Zenodo, 2017)

Listening Comprehension over Argumentative Content. - Shachar Mirkin; Guy Moshkowich; Matan Orbach; Lili Kotlerman; Yoav Kantor; Tamar Lavee; Michal Jacovi; Yonatan Bilu; Ranit Aharonov; Noam Slonim (EMNLP, 2018)

From Surrogacy to Adoption; From Bitcoin to Cryptocurrency: Debate Topic Expansion. - Roy Bar-Haim; Dalia Krieger; Orith Toledo-Ronen; Lilach Edelstein; Yonatan Bilu; Alon Halfon; Yoav Katz; Amir Menczel; Ranit Aharonov; Noam Slonim (ACL (1), 2019)

Argument Invention from First Principles. - Yonatan Bilu; Ariel Gera; Daniel Hershcovich; Benjamin Sznajder; Dan Lahav; Guy Moshkowich; Anael Malet; Assaf Gavron; Noam Slonim (ACL (1), 2019)

Towards Effective Rebuttal: Listening Comprehension Using Corpus-Wide Claim Mining. - Tamar Lavee; Matan Orbach; Lili Kotlerman; Yoav Kantor; Shai Gretz; Lena Dankin; Michal Jacovi; Yonatan Bilu; Ranit Aharonov; Noam Slonim (ArgMining@ACL, 2019)

A Dataset of General-Purpose Rebuttal. - Matan Orbach; Yonatan Bilu; Ariel Gera; Yoav Kantor; Lena Dankin; Tamar Lavee; Lili Kotlerman; Shachar Mirkin; Michal Jacovi; Ranit Aharonov; Noam Slonim (EMNLP/IJCNLP (1), 2019)

Towards Effective Rebuttal: Listening Comprehension using Corpus-Wide Claim Mining. - Tamar Lavee; Matan Orbach; Lili Kotlerman; Yoav Kantor; Shai Gretz; Lena Dankin; Shachar Mirkin; Michal Jacovi; Yonatan Bilu; Ranit Aharonov; Noam Slonim (CoRR, 2019)

Controversy in Context. - Benjamin Sznajder; Ariel Gera; Yonatan Bilu; Dafna Sheinwald; Ella Rabinovich; Ranit Aharonov; David Konopnicki; Noam Slonim (CoRR, 2019)

Corpus Wide Argument Mining - A Working Solution. - Liat Ein-Dor; Eyal Shnarch; Lena Dankin; Alon Halfon; Benjamin Sznajder; Ariel Gera; Carlos Alzate; Martin Gleize; Leshem Choshen; Yufang Hou 001; Yonatan Bilu; Ranit Aharonov; et al. (AAAI, 2020)

Out of the Echo Chamber: Detecting Countering Debate Speeches. - Matan Orbach; Yonatan Bilu; Assaf Toledo; Dan Lahav; Michal Jacovi; Ranit Aharonov; Noam Slonim (ACL, 2020)

The workweek is the best time to start a family - A Study of GPT-2 Based Claim Generation. - Shai Gretz; Yonatan Bilu; Edo Cohen-Karlik; Noam Slonim (EMNLP (Findings), 2020)

Multilingual Argument Mining: Datasets and Analysis. - Orith Toledo-Ronen; Matan Orbach; Yonatan Bilu; Artem Spector; Noam Slonim (EMNLP (Findings), 2020)

What if we had no Wikipedia? Domain-independent Term Extraction from a Large News Corpus. - Yonatan Bilu; Shai Gretz; Edo Cohen; Noam Slonim (CoRR, 2020)

An autonomous debating system. - Noam Slonim; Yonatan Bilu; Carlos Alzate; Roy Bar-Haim; Ben Bogin; Francesca Bonin; Leshem Choshen; Edo Cohen-Karlik; Lena Dankin; Lilach Edelstein; Liat Ein-Dor; Roni Friedman-Melamed; et al. (Nat., 2021)

SNOMED CT entity linking challenge. - Rory Davidson; Will Hardman; Guy Amit; Yonatan Bilu; Vincenzo Della Mea; Aleksandr Galaida; Irena Girshovitz; Mikhail Kulyabin; Mihai Horia Popescu; Kevin Roitero; Gleb Sokolov; Chen Yanover (J. Am. Medical Informatics Assoc., 2025)