Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura. - Yonatan H. Grad; Frederick P. Roth; Marc S. Halfon; George M. Church (Bioinform., 2004)

A Bayesian model of acquisition and clearance of bacterial colonization. - Marko Järvenpää; Mohamad R. Abdul Sater; Georgia K. Lagoudas; Paul C. Blainey; Loren G. Miller; James A. McKinnell; Susan S. Huang; Yonatan H. Grad; Pekka Marttinen (CoRR, 2018)

Evaluation of parameters affecting performance and reliability of machine learning-based antibiotic susceptibility testing from whole genome sequencing data. - Allison L. Hicks; Nicole E. Wheeler; Leonor Sánchez-Busó; Jennifer L. Rakeman; Simon R. Harris; Yonatan H. Grad (PLoS Comput. Biol., 2019)

A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation. - Marko Järvenpää; Mohamad R. Abdul Sater; Georgia K. Lagoudas; Paul C. Blainey; Loren G. Miller; James A. McKinnell; Susan S. Huang; Yonatan H. Grad; Pekka Marttinen (PLoS Comput. Biol., 2019)

Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibiotics. - Reza Yaesoubi; Ted Cohen; Katherine Hsu; Thomas L. Gift; Sancta B. St. Cyr; Joshua A. Salomon; Yonatan H. Grad (PLoS Comput. Biol., 2022)

Infectious disease surveillance needs for the United States: lessons from COVID-19. - Marc Lipsitch; Mary T. Bassett; John S. Brownstein; Paul Elliott; David Eyre; M. Kate Grabowski; James A. Hay; Michael A. Johansson; Stephen M. Kissler; Daniel B. Larremore; Jennifer Layden; Justin Lessler; et al. (CoRR, 2023)

Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization. - Fanni Ojala; Mohamad R. Abdul Sater; Loren G. Miller; James A. McKinnell; Mary K. Hayden; Susan S. Huang; Yonatan H. Grad; Pekka Marttinen (PLoS Comput. Biol., 2023)

Surveillance strategies for the detection of new pathogen variants across epidemiological contexts. - Kirstin I. Oliveira Roster; Stephen M. Kissler; Enoma Omoregie; Jade C. Wang; Helly Amin; Steve Di Lonardo; Scott Hughes; Yonatan H. Grad (PLoS Comput. Biol., 2024)