Yong Chen

Orcid: 0000-0003-0835-0788

Affiliations:
  • University of Pennsylvania, Department of Biostatistics, Philadelphia, PA, USA
  • Johns Hopkins University, Baltimore, MD, USA


According to our database1, Yong Chen authored at least 61 papers between 2013 and 2023.

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Bibliography

2023
Towards More Generalizable and Accurate Sentence Classification in Medical Abstracts with Less Data.
J. Heal. Informatics Res., December, 2023

Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes.
J. Biomed. Informatics, September, 2023

Missing data matter: an empirical evaluation of the impacts of missing EHR data in comparative effectiveness research.
J. Am. Medical Informatics Assoc., June, 2023

Predicting the Risk of Alzheimer's Disease and Related Dementia in Patients with Mild Cognitive Impairment Using a Semi-Competing Risk Approach.
Informatics, 2023

Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer's disease and related dementias.
Int. J. Medical Informatics, 2023

2022
Federated Multi-view Learning for Private Medical Data Integration and Analysis.
ACM Trans. Intell. Syst. Technol., 2022

Distributed learning for heterogeneous clinical data with application to integrating COVID-19 data across 230 sites.
npj Digit. Medicine, 2022

Privacy-preserving harmonization via distributed ComBat.
NeuroImage, 2022

Federated learning algorithms for generalized mixed-effects model (GLMM) on horizontally partitioned data from distributed sources.
BMC Medical Informatics Decis. Mak., 2022

Distributed Quasi-Poisson regression algorithm for modeling multi-site count outcomes in distributed data networks.
J. Biomed. Informatics, 2022

dPQL: a lossless distributed algorithm for generalized linear mixed model with application to privacy-preserving hospital profiling.
J. Am. Medical Informatics Assoc., 2022

SAT: a Surrogate-Assisted Two-wave case boosting sampling method, with application to EHR-based association studies.
J. Am. Medical Informatics Assoc., 2022

Improving Sentence Classification in Abstracts of Randomized Controlled Trial using Prompt Learning.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Tensor-Based Multi-Modal Multi-Target Regression for Alzheimer's Disease Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Studying pediatric health outcomes with electronic health records using Bayesian clustering and trajectory analysis.
J. Biomed. Informatics, 2021

A cost-effective chart review sampling design to account for phenotyping error in electronic health records (EHR) data.
J. Am. Medical Informatics Assoc., 2021

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning.
J. Am. Medical Informatics Assoc., 2021

Generalized co-sparse factor regression.
Comput. Stat. Data Anal., 2021

Multiplex Graph Networks for Multimodal Brain Network Analysis.
CoRR, 2021

Federated Multi-View Learning for Private Medical Data Integration and Analysis.
CoRR, 2021

How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles.
Briefings Bioinform., 2021

A Three-Phase Fundamental Diagram from Three-Dimensional Traffic Data.
Axioms, 2021

2020
On the Modelling of Shallow-Water Waves with the Coriolis Effect.
J. Nonlinear Sci., 2020

An augmented estimation procedure for EHR-based association studies accounting for differential misclassification.
J. Am. Medical Informatics Assoc., 2020

SCOR: A secure international informatics infrastructure to investigate COVID-19.
J. Am. Medical Informatics Assoc., 2020

Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.
J. Am. Medical Informatics Assoc., 2020

Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm.
J. Am. Medical Informatics Assoc., 2020

On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients.
Health Informatics J., 2020

Ideas for how informaticians can get involved with COVID-19 research.
BioData Min., 2020

How Computational Experiments Can Improve Our Understanding of the Genetic Architecture of Common Human Diseases.
Artif. Life, 2020

Robust-ODAL: Learning from Heterogeneous Health Systems Without Sharing Patient-LevelData.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Evaluation of Phenotyping Errors on Polygenic Risk Score Predictions.
Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020), 2020

Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network.
Proceedings of the AMIA 2020, 2020

Leverage Real-World Longitudinal Data in Large Clinical Research Networks for Alzheimer's Disease and Related Dementia (ADRD).
Proceedings of the AMIA 2020, 2020

2019
Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media.
npj Digit. Medicine, 2019

Comparing drug safety of hepatitis C therapies using post-market data.
BMC Medical Informatics Decis. Mak., 2019

A regression framework to uncover pleiotropy in large-scale electronic health record data.
J. Am. Medical Informatics Assoc., 2019

Integration of genetic and clinical information to improve imputation of data missing from electronic health records.
J. Am. Medical Informatics Assoc., 2019

Automated discovery of test statistics using genetic programming.
Genet. Program. Evolvable Mach., 2019

Heterogeneity-aware and communication-efficient distributed statistical inference.
CoRR, 2019

Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning.
CoRR, 2019


ODAL: A one-shot distributed algorithm to perform logistic regressions on electronic health records data from multiple clinical sites.
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Early Usability Assessment of a Conversational Agent for HPV Vaccination.
Proceedings of the Improving Usability, Safety and Patient Outcomes with Health Information Technology, 2019

Discovering test statistics using genetic programming.
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

2018
Visualized Emotion Ontology: a model for representing visual cues of emotions.
BMC Medical Informatics Decis. Mak., 2018

PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data.
J. Am. Medical Informatics Assoc., 2018

How computational thought experiments can improve our understanding of the genetic architecture of common human diseases.
Proceedings of the 2018 Conference on Artificial Life, 2018

Comparing Pharmacovigilance Outcomes Between FAERS and EMR Data for Acute Mania Patients.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Comparing adverse effects of Hepatitis C drugs using FAERS data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Two-Stage Working Model Strategy for Network Analysis Under Hierarchical Exponential Random Graph Models.
Proceedings of the IEEE/ACM 2018 International Conference on Advances in Social Networks Analysis and Mining, 2018

Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS.
Proceedings of the AMIA 2018, 2018

2017
A signal detection method for temporal variation of adverse effect with vaccine adverse event reporting system data.
BMC Medical Informatics Decis. Mak., 2017

pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data.
Bioinform., 2017

Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS.
Proceedings of the Data Mining and Big Data - Second International Conference, 2017

2016
Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011.
J. Biomed. Semant., 2016

An Empirical Study for Impacts of Measurement Errors on EHR based Association Studies.
Proceedings of the AMIA 2016, 2016

2015
Trivalent Influenza Vaccine Adverse Event Analysis Based On MedDRA System Organ Classes Using VAERS Data.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

2013
SIBER: systematic identification of bimodally expressed genes using RNAseq data.
Bioinform., 2013


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