A comparison of university of Maryland 1km land cover dataset and a land cover dataset in China. - Hua Chen; Dafang Zhuang; Su Li; Runhe Shi; Yong Wang 001; Xinfang Yu (IGARSS, 2005)

Monitoring the biophysical composition changes of urban environments using normalized spectral mixture analysis. - Su Li; Dafang Zhuang; Runhe Shi; Yong Wang 001 (IGARSS, 2005)

A WebGIS-based system model of vehicle monitoring central platform. - Yong Wang 001; Dafang Zhuang; Runhe Shi; Su Li (IGARSS, 2005)

Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping. - Xiang-Sun Zhang; Yong Wang 001; Zhong-Wei Zhan; Ling-Yun Wu; Luonan Chen (J. Bioinform. Comput. Biol., 2005)

Alignment of Protein Interaction Networks by Integer Quadratic Programming. - Zhen-Ping Li; Yong Wang 001; Shihua Zhang; Xiang-Sun Zhang; Luonan Chen (EMBC, 2006)

Supervised Inference of Gene Regulatory Networks by Linear Programming. - Yong Wang 001; Trupti Joshi; Dong Xu 002; Xiang-Sun Zhang; Luonan Chen (ICIC (3), 2006)

Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network. - Yong Wang 001; Ling-Yun Wu; Xiang-Sun Zhang; Luonan Chen (TAMC, 2006)

Protein Structure Comparison Based on a Measure of Information Discrepancy. - Zikai Wu; Yong Wang 001; En-Min Feng; Jin-Cheng Zhao (TAMC, 2006)

Inferring gene regulatory networks from multiple microarray datasets. - Yong Wang 001; Trupti Joshi; Xiang-Sun Zhang; Dong Xu 002; Luonan Chen (Bioinform., 2006)

A novel approach based on the combination image of fraction image and normalized mnf image to urban land use/cover mapping. - Su Li; Jianjun Zhou; Wenzheng Li; Dafang Zhuang; Yong Wang 001 (IGARSS, 2007)

Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering. - Rui-Sheng Wang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (PAKDD Workshops, 2007)

Alignment of molecular networks by integer quadratic programming. - Zhen-Ping Li; Shi-Hua Zhang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Bioinform., 2007)

Inferring transcriptional regulatory networks from high-throughput data. - Rui-Sheng Wang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Bioinform., 2007)

Predicting gene ontology functions from protein's regional surface structures. - Zhi-Ping Liu; Ling-Yun Wu; Yong Wang 001; Luonan Chen; Xiang-Sun Zhang (BMC Bioinform., 2007)

Analysis on multi-domain cooperation for predicting protein-protein interactions. - Rui-Sheng Wang; Yong Wang 001; Ling-Yun Wu; Xiang-Sun Zhang; Luonan Chen (BMC Bioinform., 2007)

Supervised classification of protein structures based on convex hull representation. - Yong Wang 001; Ling-Yun Wu; Luonan Chen; Xiang-Sun Zhang (Int. J. Bioinform. Res. Appl., 2007)

Gene function prediction using labeled and unlabeled data. - Xing-Ming Zhao; Yong Wang 001; Luonan Chen; Kazuyuki Aihara (BMC Bioinform., 2008)

Protein cavity clustering based on community structure of pocket similarity network. - Zhi-Ping Liu; Ling-Yun Wu; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Int. J. Bioinform. Res. Appl., 2008)

Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures. - Rui-Sheng Wang; Shi-Hua Zhang; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Neurocomputing, 2008)

Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. - Zhi-Ping Liu; Yong Wang 001; Tieqiao Wen; Xiang-Sun Zhang; Weiming Xia; Luonan Chen (SMC, 2009)

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases. - Jiguang Wang; Shi-Hua Zhang; Yong Wang 001; Luonan Chen; Xiang-Sun Zhang (PLoS Comput. Biol., 2009)

Evaluating Protein Similarity from Coarse Structures. - Yong Wang 001; Ling-Yun Wu; Ji-Hong Zhang; Zhong-Wei Zhan; Xiang-Sun Zhang; Luonan Chen (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Prediction of protein-RNA binding sites by a random forest method with combined features. - Zhi-Ping Liu; Ling-Yun Wu; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (Bioinform., 2010)

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains. - Zhi-Ping Liu; Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2010)

Optimization meets systems biology. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2010)

Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation. - Xian-Wen Ren; Yong-Cui Wang; Yong Wang 001; Xiang-Sun Zhang; Nai-Yang Deng (BMC Bioinform., 2011)

Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context. - Yong-Cui Wang; Yong Wang 001; Zhi-Xia Yang; Nai-Yang Deng (BMC Syst. Biol., 2011)

Computational systems biology: integration of sequence, structure, network, and dynamics. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2011)

Kernel-based data fusion improves the drug-protein interaction prediction. - Yong-Cui Wang; Chunhua Zhang; Nai-Yang Deng; Yong Wang 001 (Comput. Biol. Chem., 2011)

A new method to identify repositioned drugs for prostate cancer. - Zikai Wu; Yong Wang 001; Luonan Chen (ISB, 2012)

Identifying mutated core modules in glioblastoma by integrative network analysis. - Junhua Zhang 002; Shi-Hua Zhang; Yong Wang 001; Junfei Zhao; Xiang-Sun Zhang (ISB, 2012)

A unified computational model for revealing and predicting subtle subtypes of cancers. - Xian-Wen Ren; Yong Wang 001; Jiguang Wang; Xiang-Sun Zhang (BMC Bioinform., 2012)

A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. - Guanying Piao; Shigeru Saito; Yidan Sun; Zhi-Ping Liu; Yong Wang 001; Xiao Han; Jiarui Wu; Huarong Zhou; Luonan Chen; Katsuhisa Horimoto (BMC Syst. Biol., 2012)

Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection. - Yong Wang 001; Qiao-Feng Wu; Chen Chen; Ling-Yun Wu; Xian-Zhong Yan; ShuGuang Yu; Xiang-Sun Zhang; Fan-Rong Liang (BMC Syst. Biol., 2012)

Modelling biological systems from molecules to dynamical networks. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2012)

A combinatorial model and algorithm for globally searching community structure in complex networks. - Xiang-Sun Zhang; Zhen-Ping Li; Rui-Sheng Wang; Yong Wang 001 (J. Comb. Optim., 2012)

Network predicting drug's anatomical therapeutic chemical code. - Yong-Cui Wang; Shi-Long Chen; Nai-Yang Deng; Yong Wang 001 (Bioinform., 2013)

Computational systems biology in the big data era. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2013)

Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data. - Junhua Zhang 002; Shi-Hua Zhang; Yong Wang 001; Xiang-Sun Zhang (BMC Syst. Biol., 2013)

NCC-AUC: an AUC optimization method to identify multi-biomarker panel for cancer prognosis from genomic and clinical data. - Meng Zou; Zhaoqi Liu; Xiang-Sun Zhang; Yong Wang 001 (Bioinform., 2015)

Potts model based on a Markov process computation solves the community structure problem effectively. - Hui-Jia Li; Yong Wang 001; Ling-Yun Wu; Junhua Zhang 002; Xiang-Sun Zhang (CoRR, 2015)

Computational probing protein-protein interactions targeting small molecules. - Yong-Cui Wang; Shi-Long Chen; Nai-Yang Deng; Yong Wang 001 (Bioinform., 2016)

Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations. - Yuzhen Guo; Fengying Tao; Zikai Wu; Yong Wang 001 (BMC Syst. Biol., 2017)

Understanding biological systems through the lens of data. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2017)

Integrating data- and model-driven strategies in systems biology. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Syst. Biol., 2018)

Systems biology intertwines with single cell and AI. - Yong Wang 001; Xiang-Sun Zhang; Luonan Chen (BMC Bioinform., 2019)

Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs. - Yongcui Wang; Shilong Chen; Luonan Chen; Yong Wang 001 (PLoS Comput. Biol., 2019)

A Semisupervised Classification Approach for Multidomain Networks With Domain Selection. - Chuan Chen 001; Jingxue Xin; Yong Wang 001; Luonan Chen; Michael K. Ng 001 (IEEE Trans. Neural Networks Learn. Syst., 2019)

scTIM: seeking cell-type-indicative marker from single cell RNA-seq data by consensus optimization. - Zhan-Ying Feng; Xianwen Ren; Yuan Fang; Yining Yin; Chutian Huang; Yimin Zhao; Yong Wang 001 (Bioinform., 2020)

ZokorDB: tissue specific regulatory network annotation for non-coding elements of plateau zokor. - Jingxue Xin; Junjun Hao; Lang Chen; Tao Zhang; Lei Li; Luonan Chen; Wenmin Zhao; Xuemei Lu; Peng Shi; Yong Wang 001 (Quant. Biol., 2020)

ELF: Extract Landmark Features By Optimizing Topology Maintenance, Redundancy, and Specificity. - Zhan-Ying Feng; Yong Wang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

MIMIC: an optimization method to identify cell type-specific marker panel for cell sorting. - Meng Zou; Zhana Duren; Qiuyue Yuan; Henry Li; Andrew Paul Hutchins; Wing Hung Wong; Yong Wang 001 (Briefings Bioinform., 2021)

Hydrodynamic Limit of the Boltzmann Equation to the Planar Rarefaction Wave in Three Dimensional Space. - Guanfa Wang; Yong Wang 001; Jiawei Zhou (SIAM J. Math. Anal., 2021)

Annotating regulatory elements by heterogeneous network embedding. - Yurun Lu; Zhan-Ying Feng; Songmao Zhang; Yong Wang 001 (Bioinform., 2022)

Networked Knowledge and Complex Networks: An Engineering View. - Jinhu Lü; Guanghui Wen; Ruqian Lu; Yong Wang 001; Songmao Zhang (IEEE CAA J. Autom. Sinica, 2022)

CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network. - Xiangyu Pan; Zhaoxia Ma; Xinqi Sun; Hui Li; Tingting Zhang; Chen Zhao; Nini Wang; Rasmus Heller; Wing Hung Wong; Wen Wang; Yu Jiang; Yong Wang 001 (Genom. Proteom. Bioinform., 2023)

Predicting RNA polymerase II transcriptional elongation pausing and associated histone code. - Lixin Ren; Wanbiao Ma; Yong Wang 001 (Briefings Bioinform., 2024)

SpecLoop predicts cell type-specific chromatin loop via transcription factor cooperation. - Lixin Ren; Wanbiao Ma; Yong Wang 001 (Comput. Biol. Medicine, 2024)