BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. - Wenming Zhao; Jing Wang 003; Ximiao He; Xiaobing Huang; Yongzhi Jiao; Mingtao Dai; Shulin Wei; Jian Fu; Ye Chen; Xiaoyu Ren; Yong Zhang 036; Peixiang Ni; et al. (Nucleic Acids Res., 2004)

ChickVD: a sequence variation database for the chicken genome. - Jing Wang 003; Ximiao He; Jue Ruan; Mingtao Dai; Jie Chen; Yong Zhang 036; Yafeng Hu; Chen Ye; Shengting Li; Lijuan Cong; Lin Fang; Bin Liu; et al. (Nucleic Acids Res., 2005)

WEGO: a web tool for plotting GO annotations. - Jia Ye; Lin Fang; Hongkun Zheng; Yong Zhang 036; Jie Chen; Zengjin Zhang; Jing Wang 003; Shengting Li; Ruiqiang Li; Lars Bolund; Jun Wang 004 (Nucleic Acids Res., 2006)

MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. - Yanling Zhang; Yong Zhang 036; Jun Adachi; Jesper V. Olsen; Rong Shi; Gustavo de Souza; Erica Pasini; Leonard J. Foster; Boris Macek; Alexandre Zougman; Chanchal Kumar; Jacek R. Wisniewski; et al. (Nucleic Acids Res., 2007)

Evolutionary Transients in the Rice Transcriptome. - Jun Wang 004; Jianguo Zhang; Ruiqiang Li; Hongkun Zheng; Jun Li 051; Yong Zhang 036; Heng Li 002; Peixiang Ni; Songgang Li; Shengting Li; Jingqiang Wang; Dongyuan Liu; et al. (Genom. Proteom. Bioinform., 2010)

WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update. - Jia Ye; Yong Zhang 036; Huihai Cui; Jiawei Liu; Yuqing Wu; Yun Cheng; Huixing Xu; Xingxin Huang; Shengting Li; An Zhou; Xiuqing Zhang; Lars Bolund; et al. (Nucleic Acids Res., 2018)

SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles. - Yong Zhang 036; Yongsheng Chen; Huixin Xu; Junbin Fang; Zijian Zhao; Weipeng Hu; Xiaoqin Yang; Jia Ye; Yun Cheng; Jiayin Wang; Weiqiang Sun; Jian Wang 065; et al. (BMC Bioinform., 2020)

SOAPMetaS: profiling large metagenome datasets efficiently on distributed clusters. - Shixu He; Zhibo Huang; Xiaohan Wang; Lin Fang; Shengkang Li; Yong Zhang 036; Gengyun Zhang (Bioinform., 2021)

Computational Approaches and Challenges in Spatial Transcriptomics. - Shuangsang Fang; Bichao Chen; Yong Zhang 036; Haixi Sun; Longqi Liu; Shiping Liu; Yuxiang Li; Xun Xu (Genom. Proteom. Bioinform., 2023)