Homology modeling and molecular dynamics simulation studies of human type 1 3beta-hydroxysteroid dehydrogenase: Toward the understanding of cofactor specificity. - Yongbing Zhao; Jing-Fa Xiao (J. Comput. Chem., 2011)

PGAP: pan-genomes analysis pipeline. - Yongbing Zhao; Jiayan Wu; Junhui Yang; Shixiang Sun; Jing-Fa Xiao; Jun Yu 004 (Bioinform., 2012)

PanGP: A tool for quickly analyzing bacterial pan-genome profile. - Yongbing Zhao; Xinmiao Jia; Junhui Yang; Yunchao Ling; Zhang Zhang 002; Jun Yu 004; Jiayan Wu; Jing-Fa Xiao (Bioinform., 2014)

MethBank 3.0: a database of DNA methylomes across a variety of species. - Rujiao Li; Fang Liang; Mengwei Li; Dong Zou; Shixiang Sun; Yongbing Zhao; Wenming Zhao; Yiming Bao; Jing-Fa Xiao; Zhang Zhang 002 (Nucleic Acids Res., 2018)

NucMap: a database of genome-wide nucleosome positioning map across species. - Yongbing Zhao; Jinyue Wang; Fang Liang; Yanxia Liu; Qi Wang 072; Hao Zhang; Meiye Jiang; Zhewen Zhang; Wenming Zhao; Yiming Bao; Zhang Zhang 002; Jiayan Wu; et al. (Nucleic Acids Res., 2019)

PADS Arsenal: a database of prokaryotic defense systems related genes. - Yadong Zhang; Zhewen Zhang; Hao Zhang; Yongbing Zhao; Zaichao Zhang; Jing-Fa Xiao (Nucleic Acids Res., 2020)

Assessment and Optimization of Explainable Machine Learning Models Applied to Transcriptomic Data. - Yongbing Zhao; Jinfeng Shao; Yan W. Asmann (Genom. Proteom. Bioinform., 2022)

TFSyntax: a database of transcription factors binding syntax in mammalian genomes. - Yongbing Zhao (Nucleic Acids Res., 2023)

Enhanced label constrained contrastive learning for chromosome optical microscopic image classification. - Yongbing Zhao; Ge Song; Peng Wang 155 (Biomed. Signal Process. Control., 2024)