Dynamic tomography with curve evolution methods. - Yonggang Shi; William Clement Karl (ICASSP, 2002)

Dynamic tomography using curve evolution with spatial-temporal regularization. - Yonggang Shi; William Clement Karl; David A. Castañón (ICIP (2), 2002)

Tomographic reconstruction of dynamic objects. - Yonggang Shi; William Clement Karl (Computational Imaging, 2003)

Curve evolution methods for dynamic tomography with unknown dynamic models. - Yonggang Shi; William Clement Karl; David A. Castañón (Image Processing, 2003)

Performance guarantees in sensor networks. - Venkatesh Saligrama; Yonggang Shi; William Clement Karl (ICASSP (2), 2004)

Shape reconstruction from unorganized points with a data-driven level set method. - Yonggang Shi; William Clement Karl (ICASSP (3), 2004)

Level Set Methods for Dynamic Tomography. - Yonggang Shi; William Clement Karl (ISBI, 2004)

Differentiable Minimin Shape Distance For Incorporating Topological Priors in Biomedical Imaging. - Yonggang Shi; William Clement Karl (ISBI, 2004)

Multiple motion and occlusion segmentation with a multiphase level set method. - Yonggang Shi; Janusz Konrad; William Clement Karl (VCIP, 2004)

Applying Prior Knowledge in the Segmentation of 3D Complex Anatomic Structures. - Hong Shen 003; Yonggang Shi; Zhigang Peng (CVBIA, 2005)

Real-Time Tracking Using Level Sets. - Yonggang Shi; William Clement Karl (CVPR (2), 2005)

A Fast Level Set Method Without Solving PDEs. - Yonggang Shi; William Clement Karl (ICASSP (2), 2005)

Joint Sulci Detection Using Graphical Models and Boosted Priors. - Yonggang Shi; Zhuowen Tu; Allan L. Reiss; Rebecca A. Dutton; Agatha D. Lee; Albert M. Galaburda; Ivo D. Dinov; Paul M. Thompson; Arthur W. Toga (IPMI, 2007)

Hamilton-Jacobi Skeletons on Cortical Surfaces with Applications in Characterizing the Gyrification Pattern Inwilliams Syndrome. - Yonggang Shi; Allan L. Reiss; Agatha D. Lee; Rebecca A. Dutton; Ursula Bellugi; Albert M. Galaburda; Julie R. Korenberg; Debra L. Mills; Ivo D. Dinov; Paul M. Thompson; Arthur W. Toga (ISBI, 2007)

Direct cortical mapping via solving partial differential equations on implicit surfaces. - Yonggang Shi; Paul M. Thompson; Ivo D. Dinov; Stanley J. Osher; Arthur W. Toga (Medical Image Anal., 2007)

Direct mapping of hippocampal surfaces with intrinsic shape context. - Yonggang Shi; Paul M. Thompson; Greig I. de Zubicaray; Stephen E. Rose; Zhuowen Tu; Ivo D. Dinov; Arthur W. Toga (NeuroImage, 2007)

Anisotropic Laplace-Beltrami eigenmaps: Bridging Reeb graphs and skeletons. - Yonggang Shi; Rongjie Lai; Sheila Krishna; Nancy L. Sicotte; Ivo D. Dinov; Arthur W. Toga (CVPR Workshops, 2008)

Models of Normal Variation and Local Contrasts in Hippocampal Anatomy. - Xinyang Liu; Washington Mio; Yonggang Shi; Ivo D. Dinov; Xiuwen Liu; Natasha Leporé; Franco Lepore; Madeleine Fortin; Patrice Voss; Maryse Lassonde; Paul M. Thompson (MICCAI (2), 2008)

Harmonic Surface Mapping with Laplace-Beltrami Eigenmaps. - Yonggang Shi; Rongjie Lai; Kyle C. Kern; Nancy L. Sicotte; Ivo D. Dinov; Arthur W. Toga (MICCAI (2), 2008)

A Real-Time Algorithm for the Approximation of Level-Set-Based Curve Evolution. - Yonggang Shi; William Clement Karl (IEEE Trans. Image Process., 2008)

Hamilton-Jacobi Skeleton on Cortical Surfaces. - Yonggang Shi; Paul M. Thompson; Ivo D. Dinov; Arthur W. Toga (IEEE Trans. Medical Imaging, 2008)

A Method of Quantitative Analysis for Dynamic Cellular Morphological Change. - Xing An; Zhiwen Liu; Chuanfeng Lv; Yonggang Shi (BMEI, 2009)

Inverse-Consistent Surface Mapping with Laplace-Beltrami Eigen-Features. - Yonggang Shi; Jonathan H. Morra; Paul M. Thompson; Arthur W. Toga (IPMI, 2009)

Laplace-Beltrami Nodal Counts: A New Signature for 3D Shape Analysis. - Rongjie Lai; Yonggang Shi; Ivo D. Dinov; Tony F. Chan; Arthur W. Toga (ISBI, 2009)

Mapping Hippocampal Atrophy with a Multi-Scale Model of Shape. - Xinyang Liu; Yonggang Shi; Jonathan H. Morra; Xiuwen Liu; Paul M. Thompson; Washington Mio (ISBI, 2009)

Mesh-Based Spherical Deconvolution for Physically Valid Fiber Orientation Reconstruction from Diffusion-Weighted MRI. - Vishal Patel; Yonggang Shi; Paul M. Thompson; Arthur W. Toga (ISBI, 2009)

Wavelet-Based Representation of Biological Shapes. - Bin Dong 001; Yu Mao; Ivo D. Dinov; Zhuowen Tu; Yonggang Shi; Yalin Wang 001; Arthur W. Toga (ISVC (1), 2009)

Cortical Shape Analysis in the Laplace-Beltrami Feature Space. - Yonggang Shi; Ivo D. Dinov; Arthur W. Toga (MICCAI (1), 2009)

Pattern of hippocampal shape and volume differences in blind subjects. - Natasha Leporé; Yonggang Shi; Franco Lepore; Madeleine Fortin; Patrice Voss; Yi-Yu Chou; Catherine Lord; Maryse Lassonde; Ivo D. Dinov; Arthur W. Toga; Paul M. Thompson (NeuroImage, 2009)

Joint Sulcal Detection on Cortical Surfaces With Graphical Models and Boosted Priors. - Yonggang Shi; Zhuowen Tu; Allan L. Reiss; Rebecca A. Dutton; Agatha D. Lee; Albert M. Galaburda; Ivo D. Dinov; Paul M. Thompson; Arthur W. Toga (IEEE Trans. Medical Imaging, 2009)

Metric-induced optimal embedding for intrinsic 3D shape analysis. - Rongjie Lai; Yonggang Shi; Kevin Scheibel; Scott C. Fears; Roger P. Woods; Arthur W. Toga; Tony F. Chan (CVPR, 2010)

A Model of Volumetric Shape for the Analysis of Longitudinal Alzheimer's Disease Data. - Xinyang Liu; Xiuwen Liu; Yonggang Shi; Paul M. Thompson; Washington Mio (ECCV (3), 2010)

A Riemannian model of regional degeneration of the hippocampus in Alzheimer's disease. - Xiuwen Liu; Yonggang Shi; Ying Wang; Paul M. Thompson; Washington Mio (ISBI, 2010)

Automated Sulci Identification via Intrinsic Modeling of Cortical Anatomy. - Yonggang Shi; Bo Sun; Rongjie Lai; Ivo D. Dinov; Arthur W. Toga (MICCAI (3), 2010)

A Computational Model of Multidimensional Shape. - Xiuwen Liu; Yonggang Shi; Ivo D. Dinov; Washington Mio (Int. J. Comput. Vis., 2010)

Mesh-based spherical deconvolution: A flexible approach to reconstruction of non-negative fiber orientation distributions. - Vishal Patel; Yonggang Shi; Paul M. Thompson; Arthur W. Toga (NeuroImage, 2010)

Robust Surface Reconstruction via Laplace-Beltrami Eigen-Projection and Boundary Deformation. - Yonggang Shi; Rongjie Lai; Jonathan H. Morra; Ivo D. Dinov; Paul M. Thompson; Arthur W. Toga (IEEE Trans. Medical Imaging, 2010)

Multi-modal diffeomorphic demons registration based on mutual information. - Ying Li; Yonggang Shi; Fa Jie; Zhiwen Liu; Yong Yuan (BMEI, 2011)

Automated corpus callosum extraction via Laplace-Beltrami nodal parcellation and intrinsic geodesic curvature flows on surfaces. - Rongjie Lai; Yonggang Shi; Nancy L. Sicotte; Arthur W. Toga (ICCV, 2011)

CoRPORATE: Cortical Reconstruction by Pruning Outliers with Reeb Analysis and Topology-Preserving Evolution. - Yonggang Shi; Rongjie Lai; Arthur W. Toga (IPMI, 2011)

3D elastic registration improves HARDI-derived fiber alignment and automated tract clustering. - Yan Jin 001; Yonggang Shi; Neda Jahanshad; Iman Aganj; Guillermo Sapiro; Arthur W. Toga; Paul M. Thompson (ISBI, 2011)

K-SVD for HARDI denoising. - Vishal Patel; Yonggang Shi; Paul M. Thompson; Arthur W. Toga (ISBI, 2011)

Heritability of White Matter Fiber Tract Shapes: A HARDI Study of 198 Twins. - Yan Jin 001; Yonggang Shi; Shantanu H. Joshi; Neda Jahanshad; Liang Zhan; Greig I. de Zubicaray; Katie McMahon; Nicholas G. Martin; Margaret J. Wright; Arthur W. Toga; Paul M. Thompson (MBIA, 2011)

Conformal Metric Optimization on Surface (CMOS) for Deformation and Mapping in Laplace-Beltrami Embedding Space. - Yonggang Shi; Rongjie Lai; Raja Gill; Daniel Pelletier; David C. Mohr; Nancy L. Sicotte; Arthur W. Toga (MICCAI (2), 2011)

Automated hippocampal shape analysis predicts the onset of dementia in mild cognitive impairment. - Sergi G. Costafreda; Ivo D. Dinov; Zhuowen Tu; Yonggang Shi; Cheng-Yi Liu; Iwona Kloszewska; Patrizia Mecocci; Hilkka Soininen; Magda Tsolaki; Bruno Vellas; Lars-Olof Wahlund; Christian Spenger; et al. (NeuroImage, 2011)

Modeling Dynamic Cellular Morphology in Images. - Xing An; Zhiwen Liu; Yonggang Shi; Ning Li; Yalin Wang 001; Shantanu H. Joshi (MICCAI (1), 2012)

Automatic Population HARDI White Matter Tract Clustering by Label Fusion of Multiple Tract Atlases. - Yan Jin 001; Yonggang Shi; Liang Zhan; Junning Li; Greig I. de Zubicaray; Katie McMahon; Nicholas G. Martin; Margaret J. Wright; Paul M. Thompson (MBIA, 2012)

Fast Diffusion Tensor Registration with Exact Reorientation and Regularization. - Junning Li; Yonggang Shi; Giang Tran; Ivo D. Dinov; Danny J. J. Wang; Arthur W. Toga (MICCAI (2), 2012)

Unified Geometry and Topology Correction for Cortical Surface Reconstruction with Intrinsic Reeb Analysis. - Yonggang Shi; Rongjie Lai; Arthur W. Toga (MICCAI (1), 2012)

Quantitative Analysis of Lymphocytes Morphology and Motion in Intravital Microscopic Images. - Yali Huang; Zhiwen Liu; Yonggang Shi; Ning Li; Xing An; Xiaoming Gou (EMBC, 2013)

Conformal Mapping via Metric Optimization with Application for Cortical Label Fusion. - Yonggang Shi; Rongjie Lai; Arthur W. Toga (IPMI, 2013)

Labeling white matter tracts in hardi by fusing multiple tract atlases with applications to genetics. - Yan Jin 001; Yonggang Shi; Liang Zhan; Greig I. de Zubicaray; Katie McMahon; Nicholas G. Martin; Margaret J. Wright; Paul M. Thompson (ISBI, 2013)

Voxelwise Spectral Diffusional Connectivity and Its Applications to Alzheimer's Disease and Intelligence Prediction. - Junning Li; Yan Jin 001; Yonggang Shi; Ivo D. Dinov; Danny J. J. Wang; Arthur W. Toga; Paul M. Thompson (MICCAI (1), 2013)

Locally Weighted Multi-atlas Construction. - Junning Li; Yonggang Shi; Ivo D. Dinov; Arthur W. Toga (MBIA, 2013)

Adaptively Constrained Convex Optimization for Accurate Fiber Orientation Estimation with High Order Spherical Harmonics. - Giang Tran; Yonggang Shi (MICCAI (3), 2013)

Spatial-temporal atlas of human fetal brain development during the early second trimester. - Jinfeng Zhan; Ivo D. Dinov; Junning Li; Zhonghe Zhang; Sam Hobel; Yonggang Shi; Xiangtao Lin; Alen Zamanyan; Lei Feng; Gaojun Teng; Fang Fang; Yuchun Tang; et al. (NeuroImage, 2013)

Cortical Surface Reconstruction via Unified Reeb Analysis of Geometric and Topological Outliers in Magnetic Resonance Images. - Yonggang Shi; Rongjie Lai; Arthur W. Toga (IEEE Trans. Medical Imaging, 2013)

Multi-classification of cell deformation based on object alignment and run length statistic. - Heng Li; Zhiwen Liu; Xing An; Yonggang Shi (EMBC, 2014)

Rotational gradient field for interpolation of fiber orientation distribution in connectivity analysis. - Junning Li; Yonggang Shi; Arthur W. Toga (ISBI, 2014)

Diffusion of Fiber Orientation Distribution Functions with a Rotation-Induced Riemannian Metric. - Junning Li; Yonggang Shi; Arthur W. Toga (MICCAI (3), 2014)

Persistent Reeb Graph Matching for Fast Brain Search. - Yonggang Shi; Junning Li; Arthur W. Toga (MLMI, 2014)

Automatic clustering of white matter fibers in brain diffusion MRI with an application to genetics. - Yan Jin 001; Yonggang Shi; Liang Zhan; Boris A. Gutman; Greig I. de Zubicaray; Katie L. McMahon; Margaret J. Wright; Arthur W. Toga; Paul M. Thompson (NeuroImage, 2014)

Fast Local Trust Region Technique for Diffusion Tensor Registration Using Exact Reorientation and Regularization. - Junning Li; Yonggang Shi; Giang Tran; Ivo D. Dinov; Danny J. J. Wang; Arthur W. Toga (IEEE Trans. Medical Imaging, 2014)

Metric Optimization for Surface Analysis in the Laplace-Beltrami Embedding Space. - Yonggang Shi; Rongjie Lai; Danny J. J. Wang; Daniel Pelletier; David C. Mohr; Nancy L. Sicotte; Arthur W. Toga (IEEE Trans. Medical Imaging, 2014)

Analyzing dynamic cellular morphology in time-lapsed images enabled by cellular deformation pattern recognition. - Heng Li; Zhiwen Liu; Fengqian Pang; Zhiyi Fan; Yonggang Shi (EMBC, 2015)

The measurement of cell viability based on temporal bag of words for image sequences. - Fengqian Pang; Zhiwen Liu; Heng Li; Yonggang Shi (ICIP, 2015)

Controlling False Discovery Rate in Signal Space for Transformation-Invariant Thresholding of Statistical Maps. - Junning Li; Yonggang Shi; Arthur W. Toga (IPMI, 2015)

Automated multi-atlas labeling of the fornix and its integrity in alzheimer's disease. - Yan Jin 001; Yonggang Shi; Liang Zhan; Paul M. Thompson (ISBI, 2015)

Track Filtering via Iterative Correction of TDI Topology. - Dogu Baran Aydogan; Yonggang Shi (MICCAI (1), 2015)

Quantitative analysis of live lymphocytes morphology and intracellular motion in microscopic images. - Yali Huang; Zhiwen Liu; Yonggang Shi (Biomed. Signal Process. Control., 2015)

Development of the human fetal hippocampal formation during early second trimester. - Xinting Ge; Yonggang Shi; Junning Li; Zhonghe Zhang; Xiangtao Lin; Jinfeng Zhan; Haitao Ge; Junhai Xu; Qiaowen Yu; Yuan Leng; Gaojun Teng; Lei Feng; et al. (NeuroImage, 2015)

Quaternion generic Fourier descriptor for color object recognition. - Heng Li; Zhiwen Liu; Yali Huang; Yonggang Shi (Pattern Recognit., 2015)

Fiber Orientation and Compartment Parameter Estimation From Multi-Shell Diffusion Imaging. - Giang Tran; Yonggang Shi (IEEE Trans. Medical Imaging, 2015)

Probabilistic Tractography for Topographically Organized Connectomes. - Dogu Baran Aydogan; Yonggang Shi (MICCAI (1), 2016)

Riemannian Metric Optimization for Connectivity-Driven Surface Mapping. - Jin-Kyu Gahm; Yonggang Shi (MICCAI (1), 2016)

基于图割和水平集的肾脏医学图像分割 (Renal Cortex Segmentation Using Graph Cuts and Level Sets). - Yonggang Shi; Jishuang Tan; Zhiwen Liu (计算机科学, 2016)

Automated retinofugal visual pathway reconstruction with multi-shell HARDI and FOD-based analysis. - Alexandra Kammen; Meng Law; Bosco S. Tjan; Arthur W. Toga; Yonggang Shi (NeuroImage, 2016)

Mapping Brain Anatomical Connectivity Using Diffusion Magnetic Resonance Imaging: Structural connectivity of the human brain. - Junning Li; Yonggang Shi; Arthur W. Toga (IEEE Signal Process. Mag., 2016)

Transformation Invariant Control of Voxel-Wise False Discovery Rate. - Junning Li; Yonggang Shi; Arthur W. Toga (IEEE Trans. Medical Imaging, 2016)

Characterization of single cell dynamic morphology by local deformation pattern modeling. - Heng Li; Zhiwen Liu; Fengqian Pang; Yonggang Shi (EMBC, 2017)

Cell dynamic morphology analysis by deep convolutional features. - Heng Li; Zhiwen Liu; Fengqian Pang; Yonggang Shi (EMBC, 2017)

Topographic Regularity for Tract Filtering in Brain Connectivity. - Junyan Wang; Dogu Baran Aydogan; Rohit Varma; Arthur W. Toga; Yonggang Shi (IPMI, 2017)

Holistic Mapping of Striatum Surfaces in the Laplace-Beltrami Embedding Space. - Jin-Kyu Gahm; Yonggang Shi (MICCAI (1), 2017)

FOD Restoration for Enhanced Mapping of White Matter Lesion Connectivity. - Wei Sun; Lilyana Amezcua; Yonggang Shi (MICCAI (1), 2017)

A Whole-Brain Reconstruction Approach for FOD Modeling from Multi-Shell Diffusion MRI. - Wei Sun; Junling Li; Yonggang Shi (CNI@MICCAI, 2017)

Kernel-Regularized ICA for Computing Functional Topography from Resting-State fMRI. - Junyan Wang; Yonggang Shi (MICCAI (1), 2017)

Preface. - Xinjian Chen 001; Shuo Li 001; Emanuele Trucco; Jimmy Jiang Liu; Yonggang Shi; Beiji Zou 001 (Comput. Medical Imaging Graph., 2017)

Patch-Based Mapping of Transentorhinal Cortex with a Distributed Atlas. - Jin-Kyu Gahm; Yuchun Tang; Yonggang Shi (MICCAI (3), 2018)

FOD-Based Registration for Susceptibility Distortion Correction in Connectome Imaging. - Yuchuan Qiao; Wei Sun; Yonggang Shi (CNI@MICCAI, 2018)

GIFE: Efficient and Robust Group-Wise Isometric Fiber Embedding. - Junyan Wang; Yonggang Shi (CNI@MICCAI, 2018)

Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled Deep-Convolutional Features. - Fengqian Pang; Heng Li; Yonggang Shi; Zhiwen Liu (J. Comput. Biol., 2018)

Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space. - Jin-Kyu Gahm; Yonggang Shi (Medical Image Anal., 2018)

Tracking and validation techniques for topographically organized tractography. - Dogu Baran Aydogan; Yonggang Shi (NeuroImage, 2018)

Topological false discovery rates for brain mapping based on signal height. - Junning Li; Jin-Kyu Gahm; Yonggang Shi; Arthur W. Toga (NeuroImage, 2018)

A probabilistic atlas of human brainstem pathways based on connectome imaging data. - Yuchun Tang; Wei Sun; Arthur W. Toga; John M. Ringman; Yonggang Shi (NeuroImage, 2018)

Modeling topographic regularity in structural brain connectivity with application to tractogram filtering. - Junyan Wang; Dogu Baran Aydogan; Rohit Varma; Arthur W. Toga; Yonggang Shi (NeuroImage, 2018)

Reconnection of Interrupted Curvilinear Structures via Cortically Inspired Completion for Ophthalmologic Images. - Jiong Zhang; Erik J. Bekkers; Da Chen 002; Tos T. J. M. Berendschot; Jan Schouten; Josien P. W. Pluim; Yonggang Shi; Behdad Dashtbozorg; Bart M. ter Haar Romeny (IEEE Trans. Biomed. Eng., 2018)

A Fast Fiber k-Nearest-Neighbor Algorithm with Application to Group-Wise White Matter Topography Analysis. - Junyan Wang; Yonggang Shi (IPMI, 2019)

Surface-Based Tracking of U-Fibers in the Superficial White Matter. - Jin-Kyu Gahm; Yonggang Shi (MICCAI (3), 2019)

Topographic Filtering of Tractograms as Vector Field Flows. - Xinyu Nie; Yonggang Shi (MICCAI (3), 2019)

3D Surface-Based Geometric and Topological Quantification of Retinal Microvasculature in OCT-Angiography via Reeb Analysis. - Jiong Zhang; Amir H. Kashani; Yonggang Shi (MICCAI (1), 2019)

Characterization of lenticulostriate arteries with high resolution black-blood T1-weighted turbo spin echo with variable flip angles at 3 and 7 Tesla. - Samantha J. Ma; Mona Sharifi Sarabi; Lirong Yan; Xingfeng Shao; Yue Chen; Qi Yang; Kay Jann; Arthur W. Toga; Yonggang Shi; Danny J. J. Wang (NeuroImage, 2019)

FOD-based registration for susceptibility distortion correction in brainstem connectome imaging. - Yuchuan Qiao; Wei Sun; Yonggang Shi (NeuroImage, 2019)

Limits to anatomical accuracy of diffusion tractography using modern approaches. - Kurt G. Schilling; Vishwesh Nath; Colin B. Hansen; Prasanna Parvathaneni; Justin A. Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; et al. (NeuroImage, 2019)

Unsupervised Deep Learning for Susceptibility Distortion Correction in Connectome Imaging. - Yuchuan Qiao; Yonggang Shi (MICCAI (7), 2020)

A probabilistic atlas of locus coeruleus pathways to transentorhinal cortex for connectome imaging in Alzheimer's disease. - Wei Sun; Yuchun Tang; Yuchuan Qiao; Xinting Ge; Mara Mather; John M. Ringman; Yonggang Shi (NeuroImage, 2020)

Groupwise track filtering via iterative message passing and pruning. - Yihao Xia; Yonggang Shi (NeuroImage, 2020)

Morphometric development of the human fetal cerebellum during the early second trimester. - Feifei Xu; Xinting Ge; Yonggang Shi; Zhonghe Zhang; Yuchun Tang; Xiangtao Lin; Gaojun Teng; Fengchao Zang; Nuonan Gao; Haihong Liu; Arthur W. Toga; Shuwei Liu (NeuroImage, 2020)

3D Retinal Vessel Density Mapping With OCT-Angiography. - Mona Sharifi Sarabi; Maziyar M. Khansari; Jiong Zhang; Sam Kushner-Lenhoff; Jin-Kyu Gahm; Yuchuan Qiao; Amir H. Kashani; Yonggang Shi (IEEE J. Biomed. Health Informatics, 2020)

Automated Deformation-Based Analysis of 3D Optical Coherence Tomography in Diabetic Retinopathy. - Maziyar M. Khansari; Jiong Zhang; Yuchuan Qiao; Jin-Kyu Gahm; Mona Sharifi Sarabi; Amir H. Kashani; Yonggang Shi (IEEE Trans. Medical Imaging, 2020)

3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography Images. - Jiong Zhang; Yuchuan Qiao; Mona Sharifi Sarabi; Maziyar M. Khansari; Jin-Kyu Gahm; Amir H. Kashani; Yonggang Shi (IEEE Trans. Medical Imaging, 2020)

Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal Microscopy. - Yitian Zhao; Jiong Zhang; Ella Pereira; Yalin Zheng; Pan Su 001; Jianyang Xie; Yifan Zhao 001; Yonggang Shi; Hong Qi; Jiang Liu 001; Yonghuai Liu (IEEE Trans. Medical Imaging, 2020)

Corrections to "Automated Tortuosity Analysis of Nerve Fibers in Corneal Confocal Microscopy". - Yitian Zhao; Jiong Zhang; Ella Pereira; Yalin Zheng; Pan Su 001; Jianyang Xie; Yifan Zhao 001; Yonggang Shi; Hong Qi; Jiang Liu 001; Yonghuai Liu (IEEE Trans. Medical Imaging, 2020)

Application of Random Simulation Algorithm in Physical Education Teaching Evaluation. - Yonggang Shi (CSIA (2), 2021)

Dynamic Sub-graph Learning for Patch-Based Cortical Folding Classification. - Zhiwei Deng; Jiong Zhang; Yonggang Shi (MLCN@MICCAI, 2021)

Personalized Matching and Analysis of Cortical Folding Patterns via Patch-Based Intrinsic Brain Mapping. - Jiong Zhang; Yonggang Shi (MICCAI (7), 2021)

Retrospective motion artifact correction of structural MRI images using deep learning improves the quality of cortical surface reconstructions. - Ben A. Duffy; Lu Zhao; Farshid Sepehrband; Joyce Min; Danny J. J. Wang; Yonggang Shi; Arthur W. Toga; Hosung Kim (NeuroImage, 2021)

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - Kurt G. Schilling; François Rheault; Laurent Petit; Colin B. Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi Gomez; Marco Pizzolato; et al. (NeuroImage, 2021)

Parallel Transport Tractography. - Dogu Baran Aydogan; Yonggang Shi (IEEE Trans. Medical Imaging, 2021)

Personalized dMRI Harmonization on Cortical Surface. - Yihao Xia; Yonggang Shi (MICCAI (6), 2022)

Age differences in diffusivity in the locus coeruleus and its ascending noradrenergic tract. - Shai Porat; Francesca Sibilia; Josephine Yoon; Yonggang Shi; Martin J. Dahl; Markus Werkle-Bergner; Sandra Düzel; Nils Christian Bodammer; Ulman Lindenberger; Simone Kühn; Mara Mather (NeuroImage, 2022)

Retinal ganglion cell endowment is correlated with optic tract fiber cross section, not density. - Huseyin O. Taskin; Yuchuan Qiao; Valerie J. Sydnor; Matthew Cieslak; Edda B. Haggerty; Theodore D. Satterthwaite; Jessica I. W. Morgan; Yonggang Shi; Geoffrey Karl Aguirre (NeuroImage, 2022)

Unsupervised Deep Learning for FOD-Based Susceptibility Distortion Correction in Diffusion MRI. - Yuchuan Qiao; Yonggang Shi (IEEE Trans. Medical Imaging, 2022)

Shape-Aware 3D Small Vessel Segmentation with Local Contrast Guided Attention. - Zhiwei Deng; Songnan Xu; Jianwei Zhang; Jiong Zhang; Danny J. J. Wang; Lirong Yan; Yonggang Shi (MICCAI (4), 2023)

Automated Mapping of Residual Distortion Severity in Diffusion MRI. - Shuo Huang; Lujia Zhong; Yonggang Shi (CDMRI@MICCAI, 2023)

FASSt: Filtering via Symmetric Autoencoder for Spherical Superficial White Matter Tractography. - Yuan Li; Xinyu Nie; Yao Fu; Yonggang Shi (CDMRI@MICCAI, 2023)

Flow-Based Geometric Interpolation of Fiber Orientation Distribution Functions. - Xinyu Nie; Yonggang Shi (MICCAI (8), 2023)

A Groupwise Method for the Reconstruction of Hypergraph Representation of Resting-State Functional Networks. - Mingyang Xia; Yonggang Shi (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

Uncovering Heterogeneity in Alzheimer's Disease from Graphical Modeling of the Tau Spatiotemporal Topography. - Jiaxin Yue; Yonggang Shi (MICCAI (5), 2023)

Personalized Patch-Based Normality Assessment of Brain Atrophy in Alzheimer's Disease. - Jianwei Zhang; Yonggang Shi (MICCAI (5), 2023)

Small object in the dark light scene using dual-branch channel and spatial. - Zhuoyan Xia; Yonggang Shi (J. Electronic Imaging, 2023)

Surface-Based and Shape-Informed U-Fiber Atlasing for Robust Superficial White Matter Connectivity Analysis. - Yuan Li; Xinyu Nie; Jianwei Zhang; Yonggang Shi (MICCAI (2), 2024)

Adaptive Subtype and Stage Inference for Alzheimer's Disease. - Xinkai Wang; Yonggang Shi (MICCAI (3), 2024)

TauAD: MRI-free Tau Anomaly Detection in PET Imaging via Conditioned Diffusion Models. - Lujia Zhong; Shuo Huang; Jiaxin Yue; Jianwei Zhang; Zhiwei Deng; Wenhao Chi; Yonggang Shi (CoRR, 2024)

Diffusion Model-based FOD Restoration from High Distortion in dMRI. - Shuo Huang; Lujia Zhong; Yonggang Shi (CoRR, 2024)

ssProp: Energy-Efficient Training for Convolutional Neural Networks with Scheduled Sparse Back Propagation. - Lujia Zhong; Shuo Huang; Yonggang Shi (CoRR, 2024)

Vessel density mapping of small cerebral vessels on 3D high resolution black blood MRI. - Mona Sharifi Sarabi; Samantha J. Ma; Kay Jann; John M. Ringman; Danny J. J. Wang; Yonggang Shi (NeuroImage, 2024)

Surface-Based Probabilistic Fiber Tracking in Superficial White Matter. - Xinyu Nie; Jialiang Ruan; María Concepción García Otaduy; Lea Tenenholz Grinberg; John M. Ringman; Yonggang Shi (IEEE Trans. Medical Imaging, 2024)

Autoencoder for 4-Dimensional Fiber Orientation Distributions from Diffusion MRI. - Shuo Huang; Lujia Zhong; Yonggang Shi (ISBI, 2025)

Tau Pet Harmonization via Surface-Based Diffusion Model. - Jiaxin Yue; Jianwei Zhang; Lujia Zhong; Yonggang Shi (ISBI, 2025)