An OGSI-compliant portal for campus grids. - Barbara M. Chapman; Hari Donepudi; Yupeng Li; Priya Raghunath; Babu Sundaram; Yonghong Yan 001; Jiwen He (CE, 2003)

A Feature-Rich Workflow Description Language that Supports Resource Co-allocations. - Yonghong Yan 001; Barbara M. Chapman (High Performance Computing Workshop, 2006)

Campus Grids Meet Applications: Modeling, Metascheduling and Integration. - Yonghong Yan 001; Barbara M. Chapman (J. Grid Comput., 2006)

Scientific workflow scheduling in computational grids - Planning, reservation, and data/network-awareness. - Yonghong Yan 001; Barbara M. Chapman (GRID, 2007)

JCUDA: A Programmer-Friendly Interface for Accelerating Java Programs with CUDA. - Yonghong Yan 001; Max Grossman; Vivek Sarkar (Euro-Par, 2009)

Hierarchical Place Trees: A Portable Abstraction for Task Parallelism and Data Movement. - Yonghong Yan 001; Jisheng Zhao; Yi Guo; Vivek Sarkar (LCPC, 2009)

The habanero multicore software research project. - Rajkishore Barik; Zoran Budimlic; Vincent Cavé; Sanjay Chatterjee; Yi Guo; David M. Peixotto; Raghavan Raman; Jun Shirako; Sagnak Tasirlar; Yonghong Yan 001; Yisheng Zhao; Vivek Sarkar (OOPSLA Companion, 2009)

Hardware and Software Tradeoffs for Task Synchronization on Manycore Architectures. - Yonghong Yan 001; Sanjay Chatterjee; Daniel A. Orozco; Elkin Garcia; Zoran Budimlic; Jun Shirako; Robert S. Pavel; Guang R. Gao; Vivek Sarkar (Euro-Par (2), 2011)

Integrating MPI with Asynchronous Task Parallelism. - Yonghong Yan 001; Sanjay Chatterjee; Zoran Budimlic; Vivek Sarkar (EuroMPI, 2011)

Acceleration of bulk memory operations in a heterogeneous multicore architecture. - Jong-Hyuk Lee; Ziyi Liu 002; Xiaonan Tian; Dong Hyuk Woo; Weidong Shi; Dainis Boumber; Yonghong Yan 001; Kyeong-An Kwon (PACT, 2012)

Compile-Time Detection of False Sharing via Loop Cost Modeling. - Munara Tolubaeva; Yonghong Yan 001; Barbara M. Chapman (IPDPS Workshops, 2012)

Performance and Power Characteristics of Matrix Multiplication Algorithms on Multicore and Shared Memory Machines. - Yonghong Yan 001; Jeremy Kemp; Xiaonan Tian; Abid Muslim Malik; Barbara M. Chapman (SC Companion, 2012)

Integrating Asynchronous Task Parallelism with MPI. - Sanjay Chatterjee; Sagnak Tasirlar; Zoran Budimlic; Vincent Cavé; Milind Chabbi; Max Grossman; Vivek Sarkar; Yonghong Yan 001 (IPDPS, 2013)

A Prototype Implementation of OpenMP Task Dependency Support. - Priyanka Ghosh; Yonghong Yan 001; Deepak Eachempati; Barbara M. Chapman (IWOMP, 2013)

Early Experiences with the OpenMP Accelerator Model. - Chunhua Liao; Yonghong Yan 001; Bronis R. de Supinski; Daniel J. Quinlan; Barbara M. Chapman (IWOMP, 2013)

Compiling a High-Level Directive-Based Programming Model for GPGPUs. - Xiaonan Tian; Rengan Xu; Yonghong Yan 001; Zhifeng Yun; Sunita Chandrasekaran; Barbara M. Chapman (LCPC, 2013)

Compile Time Modeling of Off-Chip Memory Bandwidth for Parallel Loops. - Munara Tolubaeva; Yonghong Yan 001; Barbara M. Chapman (LCPC, 2013)

Predicting Cache Contention for Multithread Applications at Compile Time. - Munara Tolubaeva; Yonghong Yan 001; Barbara M. Chapman (IPDPS Workshops, 2014)

NAS Parallel Benchmarks for GPGPUs Using a Directive-Based Programming Model. - Rengan Xu; Xiaonan Tian; Sunita Chandrasekaran; Yonghong Yan 001; Barbara M. Chapman (LCPC, 2014)

Reduction Operations in Parallel Loops for GPGPUs. - Rengan Xu; Xiaonan Tian; Yonghong Yan 001; Sunita Chandrasekaran; Barbara M. Chapman (PMAM, 2014)

Supporting multiple accelerators in high-level programming models. - Yonghong Yan 001; Pei-Hung Lin; Chunhua Liao; Bronis R. de Supinski; Daniel J. Quinlan (PMAM@PPoPP, 2015)

Programming Models, Languages, and Compilers for Manycore and Heterogeneous Architectures. - Sunita Chandrasekaran; Barbara M. Chapman; Xinmin Tian; Yonghong Yan 001 (Sci. Program., 2015)

Comparison of Spark Resource Managers and Distributed File Systems. - Soulmaz Salehian; Yonghong Yan 001 (BDCloud-SocialCom-SustainCom, 2016)

A Proposal to OpenMP for Addressing the CPU Oversubscription Challenge. - Yonghong Yan 001; Jeff R. Hammond; Chunhua Liao; Alexandre E. Eichenberger (IWOMP, 2016)

Compiler transformation of nested loops for general purpose GPUs. - Xiaonan Tian; Rengan Xu; Yonghong Yan 001; Sunita Chandrasekaran; Deepak Eachempati; Barbara M. Chapman (Concurr. Comput. Pract. Exp., 2016)

Comparison of Threading Programming Models. - Solmaz Salehian; Jiawen Liu; Yonghong Yan 001 (IPDPS Workshops, 2017)

HOMP: Automated Distribution of Parallel Loops and Data in Highly Parallel Accelerator-Based Systems. - Yonghong Yan 001; Jiawen Liu; Kirk W. Cameron; Mariam Umar (IPDPS, 2017)

Evaluation of Knight Landing High Bandwidth Memory for HPC Workloads. - Solmaz Salehian; Yonghong Yan 001 (IA3@SC, 2017)

Principles of Memory-Centric Programming for High Performance Computing. - Yonghong Yan 001; Ron Brightwell; Xian-He Sun (MCHPC@SC, 2017)

A Cross-Layer Solution in Scientific Workflow System for Tackling Data Movement Challenge. - Dong Dai 001; Robert B. Ross; Dounia Khaldi; Yonghong Yan 001; Matthieu Dorier; Neda Tavakoli; Yong Chen 001 (CoRR, 2018)

Extending OpenMP Metadirective Semantics for Runtime Adaptation. - Yonghong Yan 001; Anjia Wang; Chunhua Liao; Thomas R. W. Scogland; Bronis R. de Supinski (IWOMP, 2019)

Ompparser: A Standalone and Unified OpenMP Parser. - Anjia Wang; Yaying Shi; Xinyao Yi; Yonghong Yan 001; Chunhua Liao; Bronis R. de Supinski (IWOMP, 2019)

Extending OpenMP Map Clause to Bridge Storage and Device Memory. - Kewei Yan; Anjia Wang; Xinyao Yi; Yonghong Yan 001 (MCHPC@SC, 2019)

Supporting Data Shuffle Between Threads in OpenMP. - Anjia Wang; Xinyao Yi; Yonghong Yan 001 (IWOMP, 2020)

Extending FreeCompilerCamp.org as an Online Self-Learning Platform for Compiler Development. - Justin Gosselin; Anjia Wang; Peter Pirkelbauer; Chunhua Liao; Yonghong Yan 001; Damian Dechev (EduHPC@SC, 2020)

Enhancing DataRaceBench for Evaluating Data Race Detection Tools. - Gaurav Verma; Yaying Shi; Chunhua Liao; Barbara M. Chapman; Yonghong Yan 001 (CORRECTNESS@SC, 2020)

An Ensemble Approach to Automatic Brain Tumor Segmentation. - Yaying Shi; Christian Micklisch; Erum Mushtaq; Salman Avestimehr; Yonghong Yan 001; Xiaodong Zhang (BrainLes@MICCAI (2), 2021)

CUDAMicroBench: Microbenchmarks to Assist CUDA Performance Programming. - Xinyao Yi; David Stokes; Yonghong Yan 001; Chunhua Liao (IPDPS Workshops, 2021)

RDS: a cloud-based metaservice for detecting data races in parallel programs. - Yaying Shi; Anjia Wang; Yonghong Yan 001; Chunhua Liao (UCC, 2021)

Extending OpenMP for Machine Learning-Driven Adaptation. - Chunhua Liao; Anjia Wang; Giorgis Georgakoudis; Bronis R. de Supinski; Yonghong Yan 001; David Beckingsale; Todd Gamblin (WACCPD@SC, 2021)

UPIR: Toward the Design of Unified Parallel Intermediate Representation for Parallel Programming Models. - Anjia Wang; Xinyao Yi; Yonghong Yan 001 (PACT, 2022)

Experimenting FedML and NVFLARE for Federated Tumor Segmentation Challenge. - Yaying Shi; Hongjian Gao; Salman Avestimehr; Yonghong Yan 001 (BrainLes@MICCAI (2), 2022)

Applying Quadratic Penalty Method for Intensity-Based Deformable Image Registration on BraTS-Reg Challenge 2022. - Kewei Yan; Yonghong Yan 001 (BrainLes@MICCAI (2), 2022)

Stacking Feature Maps of Multi-scaled Medical Images in U-Net for 3D Head and Neck Tumor Segmentation. - Yaying Shi; Xiaodong Zhang; Yonghong Yan 001 (HECKTOR@MICCAI, 2022)

Exploring source-to-source compiler transformation of OpenMP SIMD constructs for Intel AVX and Arm SVE vector architectures. - Patrick J. Flynn; Xinyao Yi; Yonghong Yan 001 (PMAM@PPoPP, 2022)

Generating and Analyzing Program Call Graphs using Ontology. - Ethan Dorta; Yonghong Yan 001; Chunhua Liao (ProTools@SC, 2022)

Exploring OpenMP GPU Offloading for Implementing Convolutional Neural Networks. - Kewei Yan; Yaying Shi; Yonghong Yan 001 (PMAM@PPoPP, 2023)

Upscaling Prostate Cancer MRI Images to Cell-level Resolution Using Self-supervised Learning. - Yaying Shi; Srijan Das; Yonghong Yan 001 (COMPAY@MICCAI, 2024)

Path-CT Image Registration with Self-Supervised Vision Transformer for Lung Cancer. - Yaying Shi; Anshuk Gottipati; Yonghong Yan 001 (ISBI, 2024)

RTune: Towards Automated and Coordinated Optimization of Computing and Computational Objectives of Parallel Iterative Applications. - Yonghong Yan 001; Kewei Yan; Anjia Wang (ISPASS, 2024)

Developing an Interactive OpenMP Programming Book with Large Language Models. - Xinyao Yi; Anjia Wang; Yonghong Yan 001; Chunhua Liao (IWOMP, 2024)

Real-Time and In-Situ Temperature Profiling for Determining Detonation of White Dwarf Mergers. - Kewei Yan; Yonghong Yan 001 (PDCAT, 2024)

accparser: A Standalone OpenACC Parser and Its Usage on Mapping OpenACC to OpenMP Directives. - Xinyao Yi; Anjia Wang; Yonghong Yan 001 (PDCAT, 2024)

SpMM-Bench: Performance Characterization of Sparse Formats for Sparse-Dense Matrix Multiplication. - Patrick J. Flynn; Xinyao Yi; Erik Saule; Gokcen Kestor; Yonghong Yan 001 (IPDPS (Workshops), 2025)

In-Situ Auto-Regressive Surrogate Modeling for Feature Extraction Using Ascent. - Kewei Yan; Yonghong Yan 001 (IPDPS (Workshops), 2025)

A Real-Time, Auto-Regression Method for in-Situ Feature Extraction in Hydrodynamics Simulations. - Kewei Yan; Yonghong Yan 001 (ISPASS, 2025)