Unsupervised discovery of phenotype-specific multi-omics networks. - W. Jenny Shi; Yonghua Zhuang; Pamela H. Russell; Brian D. Hobbs; Margaret M. Parker; Peter J. Castaldi; Pratyaydipta Rudra; Brian Vestal; Craig P. Hersh; Laura M. Saba; Katerina J. Kechris (Bioinform., 2019)

Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification. - Mohamed Abdel-Hafiz; Mesbah Najafi; Shahab Helmi; Katherine A. Pratte; Yonghua Zhuang; Weixuan Liu; Katerina J. Kechris; Russell Bowler; Leslie Lange; Farnoush Banaei Kashani (Frontiers Big Data, 2022)

Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization. - Weixuan Liu; Thao Vu; Iain R. Konigsberg; Katherine A. Pratte; Yonghua Zhuang; Katerina J. Kechris (BMC Bioinform., 2024)