PROSESS: a protein structure evaluation suite and server. - Mark V. Berjanskii; Yongjie Liang; Jianjun Zhou; Peter Tang; Paul Stothard; You Zhou; Joseph A. Cruz; Cam Macdonell; Guohui Lin; Paul Lu; David S. Wishart (Nucleic Acids Res., 2010)

SMPDB: The Small Molecule Pathway Database. - Alex Frolkis; Craig Knox; Emilia Lim; Timothy Jewison; Vivian Law; David D. Hau; Philip Liu; Bijaya Gautam; Son Ly; Anchi Guo; Jianguo Xia; Yongjie Liang; et al. (Nucleic Acids Res., 2010)

PHAST: A Fast Phage Search Tool. - You Zhou; Yongjie Liang; Karlene H. Lynch; Jonathan J. Dennis; David S. Wishart (Nucleic Acids Res., 2011)

BacMap: an up-to-date electronic atlas of annotated bacterial genomes. - Joseph A. Cruz; Yifeng Liu 001; Yongjie Liang; You Zhou; Michael Wilson 002; Jonathan J. Dennis; Paul Stothard; Gary H. Van Domselaar; David S. Wishart (Nucleic Acids Res., 2012)

SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. - Timothy Jewison; Yilu Su; Fatemeh Miri Disfany; Yongjie Liang; Craig Knox; Adam Maciejewski; Jenna Poelzer; Jessica Huynh; You Zhou; David Arndt; Yannick Djoumbou; Yifeng Liu 001; et al. (Nucleic Acids Res., 2014)

PolySearch2: a significantly improved text-mining system for discovering associations between human diseases, genes, drugs, metabolites, toxins and more. - Yifeng Liu 001; Yongjie Liang; David S. Wishart (Nucleic Acids Res., 2015)

Pathways with PathWhiz. - Allison Pon; Timothy Jewison; Yilu Su; Yongjie Liang; Craig Knox; Adam Maciejewski; Michael Wilson 002; David S. Wishart (Nucleic Acids Res., 2015)

T3DB: the toxic exposome database. - David S. Wishart; David Arndt; Allison Pon; Tanvir Sajed; Anchi Guo; Yannick Djoumbou; Craig Knox; Michael Wilson 002; Yongjie Liang; Jason R. Grant; Yifeng Liu 001; Seyed Ali Goldansaz; et al. (Nucleic Acids Res., 2015)

PHASTER: a better, faster version of the PHAST phage search tool. - David Arndt; Jason R. Grant; Ana Marcu; Tanvir Sajed; Allison Pon; Yongjie Liang; David S. Wishart (Nucleic Acids Res., 2016)

Heatmapper: web-enabled heat mapping for all. - Sasha Babicki; David Arndt; Ana Marcu; Yongjie Liang; Jason R. Grant; Adam Maciejewski; David S. Wishart (Nucleic Acids Res., 2016)

HMDB 4.0: the human metabolome database for 2018. - David S. Wishart; Yannick Djoumbou Feunang; Ana Marcu; An Chi Guo; Kevin Y. H. Liang; Rosa Vázquez-Fresno; Tanvir Sajed; Daniel Johnson; Carin Li; Naama Karu; Zinat Sayeeda; Elvis J. Lo; et al. (Nucleic Acids Res., 2018)

PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. - David Arndt; Ana Marcu; Yongjie Liang; David S. Wishart (Briefings Bioinform., 2019)

An Entity Alignment Method Based on Graph Attention Network with Pre-classification. - Wenqi Huang 002; Lingyu Liang; Yongjie Liang; Zhen Dai; Jiaxuan Hou; Xuanang Li; Xin Wang; Xin Chen (WISA, 2023)

K-bisimulation: A novel approach for simplifying heterogeneous information networks. - Yongjie Liang; Wujie Hu; Jinzhao Wu (Future Gener. Comput. Syst., 2025)

Medical image segmentation network based on multi-scale cross-attention and wavelet transform. - Fan Qin; Yongjie Liang; Chaofeng Yang; Yulong Cao; Jiaying Fan; Peiyuan Wang; Bizhong Wei (J. King Saud Univ. Comput. Inf. Sci., 2025)