Aligning multiple sequences adaptively. - Yongtao Ye (2014)

Predicting RNA Secondary Structures: One-grammar-fits-all Solution. - Menglu Li; Micheal Cheng; Yongtao Ye; Wing-Kai Hon; Hing-Fung Ting; Tak Wah Lam; Cy Tang; Thomas Wong; Siu-Ming Yiu (ISBRA, 2015)

Improving multiple sequence alignment by using better guide trees. - Qing Zhan; Yongtao Ye; Tak Wah Lam; Siu-Ming Yiu; Yadong Wang 001; Hing-Fung Ting (BMC Bioinform., 2015)

GLProbs: Aligning Multiple Sequences Adaptively. - Yongtao Ye; David Wai-Lok Cheung; Yadong Wang 001; Siu-Ming Yiu; Qing Zhan; Tak Wah Lam; Hing-Fung Ting (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

PnpProbs: a better multiple sequence alignment tool by better handling of guide trees. - Yongtao Ye; Tak Wah Lam; Hing-Fung Ting (BMC Bioinform., 2016)

Network Structural Balance Analysis for Sina Microblog Based on Particle Swarm Optimization Algorithm. - Xia Fu; Yajun Du; Yongtao Ye (CCIR, 2017)

A Hybrid Method to Sentiment Analysis for Chinese Microblog. - Xia Fu; Yajun Du; Yongtao Ye (CCKS, 2017)

Tracking Topic Trends for Short Texts. - Liyan He; Yajun Du; Yongtao Ye (CCKS, 2017)

Robust expansion of phylogeny for fast-growing genome sequence data. - Yongtao Ye; Marcus H. Shum; Joseph L. Tsui; Guangchuang Yu; David K. Smith; Huachen Zhu; Joseph T. Wu; Yi Guan; Tommy Tsan-Yuk Lam (PLoS Comput. Biol., 2024)