Textual Compression by Collapsible Tries. - Alberto Apostolico; Yongwook Choi (DCC, 2006)

Compressing with Collapsible Tries. - Alberto Apostolico; Yongwook Choi (ITW, 2006)

Pattern Matching in Constrained Sequences. - Yongwook Choi; Wojciech Szpankowski (ISIT, 2007)

Large deviations for constrained pattern matching. - Yongwook Choi; Wojciech Szpankowski (ISIT, 2008)

Compression of graphical structures. - Yongwook Choi; Wojciech Szpankowski (ISIT, 2009)

Energy-Optimal Distributed Algorithms for Minimum Spanning Trees. - Yongwook Choi; Gopal Pandurangan; Maleq Khan; V. S. Anil Kumar 001 (IEEE J. Sel. Areas Commun., 2009)

Fast Algorithm for Optimal Compression of Graphs. - Yongwook Choi (ANALCO, 2010)

Structural information in strings and graphs - Yongwook Choi (2010)

Constrained pattern matching. - Yongwook Choi; Wojciech Szpankowski (ACM Trans. Algorithms, 2011)

A fast computation of pairwise sequence alignment scores between a protein and a set of single-locus variants of another protein. - Yongwook Choi (BCB, 2012)

On a Recurrence Arising in Graph Compression. - Yongwook Choi; Charles Knessl; Wojciech Szpankowski (Electron. J. Comb., 2012)

Compression of Graphical Structures: Fundamental Limits, Algorithms, and Experiments. - Yongwook Choi; Wojciech Szpankowski (IEEE Trans. Inf. Theory, 2012)

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels. - Yongwook Choi; Agnes P. Chan (Bioinform., 2015)

Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach. - Josh L. Espinoza; Chris L. Dupont; Aubrie O'Rourke; Sinem Beyhan; Pavel Morales; Amy Spoering; Kirsten J. Meyer; Agnes P. Chan; Yongwook Choi; William C. Nierman; Kim Lewis; Karen E. Nelson (PLoS Comput. Biol., 2021)