mCSM-PPI2: predicting the effects of mutations on protein-protein interactions. - Carlos H. M. Rodrigues; Yoochan Myung; Douglas E. V. Pires; David B. Ascher (Nucleic Acids Res., 2019)

mCSM-AB2: guiding rational antibody design using graph-based signatures. - Yoochan Myung; Carlos H. M. Rodrigues; David B. Ascher; Douglas E. V. Pires (Bioinform., 2020)

EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening. - Douglas E. V. Pires; Wandré N. P. Veloso; Yoochan Myung; Carlos H. M. Rodrigues; Michael Silk; Pâmela M. Rezende; Francislon Silva; Joicymara S. Xavier; João P. L. Velloso; Carlos Henrique da Silveira; David B. Ascher (Bioinform., 2020)

Development of Natural Compound Molecular Fingerprint (NC-MFP) with the Dictionary of Natural Products (DNP) for natural product-based drug development. - Myungwon Seo; Hyun Kil Shin; Yoochan Myung; Sungbo Hwang; Kyoung Tai No (J. Cheminformatics, 2020)

mmCSM-AB: guiding rational antibody engineering through multiple point mutations. - Yoochan Myung; Douglas E. V. Pires; David B. Ascher (Nucleic Acids Res., 2020)

Identifying Genotype-Phenotype Correlations via Integrative Mutation Analysis. - Edward Airey; Stephanie Portelli; Joicymara S. Xavier; Yoochan Myung; Michael Silk; Malancha Karmakar; João P. L. Velloso; Carlos H. M. Rodrigues; Hardik H. Parate; Anjali Garg; Raghad Al-Jarf; Lucy Barr; et al. (Artificial Neural Networks, 3rd Edition, 2021)

epitope3D: a machine learning method for conformational B-cell epitope prediction. - Bruna Moreira da Silva; Yoochan Myung; David B. Ascher; Douglas E. V. Pires (Briefings Bioinform., 2022)

CSM-AB: graph-based antibody-antigen binding affinity prediction and docking scoring function. - Yoochan Myung; Douglas E. V. Pires; David B. Ascher (Bioinform., 2022)

piscesCSM: prediction of anticancer synergistic drug combinations. - Raghad Al-Jarf; Carlos H. M. Rodrigues; Yoochan Myung; Douglas E. V. Pires; David B. Ascher (J. Cheminformatics, 2024)