An empirical study on the software integrity of virtual appliances: are you really getting what you paid for? - Jun Ho Huh; Mirko Montanari; Derek Dagit; Rakesh Bobba; Dongwook Kim; Yoonjoo Choi; Roy H. Campbell (AsiaCCS, 2013)

Assessing software integrity of virtual appliances through software whitelists. - Jun Ho Huh; Mirko Montanari; Derek Dagit; Rakesh Bobba; Dongwook Kim; Yoonjoo Choi; Roy H. Campbell (NDSS, 2013)

Structure-Guided Deimmunization of Therapeutic Proteins. - Andrew S. Parker; Yoonjoo Choi; Karl E. Griswold; Chris Bailey-Kellogg (J. Comput. Biol., 2013)

Structure-based redesign of proteins for minimal T-cell epitope content. - Yoonjoo Choi; Karl E. Griswold; Chris Bailey-Kellogg (J. Comput. Chem., 2013)

Mapping the Pareto Optimal Design Space for a Functionally Deimmunized Biotherapeutic Candidate. - Regina S. Salvat; Andrew S. Parker; Yoonjoo Choi; Chris Bailey-Kellogg; Karl E. Griswold (PLoS Comput. Biol., 2015)

DisruPPI: structure-based computational redesign algorithm for protein binding disruption. - Yoonjoo Choi; Jacob M. Furlon; Ryan B. Amos; Karl E. Griswold; Chris Bailey-Kellogg (Bioinform., 2018)

GradDock: rapid simulation and tailored ranking functions for peptide-MHC Class I docking. - Hyun-Ho Kyeong; Yoonjoo Choi; Hak-Sung Kim (Bioinform., 2018)

B-SIDER: Computational Algorithm for the Design of Complementary β-Sheet Sequences. - Tae-Geun Yu; Hak-Sung Kim; Yoonjoo Choi (J. Chem. Inf. Model., 2019)

Computer-guided binding mode identification and affinity improvement of an LRR protein binder without structure determination. - Yoonjoo Choi; Sukyo Jeong; Jung-Min Choi; Christian NDong; Karl E. Griswold; Chris Bailey-Kellogg; Hak-Sung Kim (PLoS Comput. Biol., 2020)

Epitopes of Protein Binders Are Related to the Structural Flexibility of a Target Protein Surface. - Dong-Gun Kim; Yoonjoo Choi; Hak-Sung Kim (J. Chem. Inf. Model., 2021)

Artificial intelligence for antibody reading comprehension: AntiBERTa. - Yoonjoo Choi (Patterns, 2022)