Translational Systems Biology of Inflammation. - Yoram Vodovotz; Márie Csete; John Bartels; Steven Chang; Gary An (PLoS Comput. Biol., 2008)

A linear code parameter search algorithm with applications to immunology. - Gregory M. Constantine; John Bartels; Carson C. Chow; Gilles Clermont; Yoram Vodovotz (Comput. Optim. Appl., 2009)

SPARK: A Framework for Multi-Scale Agent-Based Biomedical Modeling. - Alexey Solovyev; Maxim Mikheev; Leming Zhou; Joyeeta Dutta-Moscato; Cordelia Ziraldo; Gary An; Yoram Vodovotz; Qi Mi (Int. J. Agent Technol. Syst., 2010)

A multiscale modeling approach to inflammation: A case study in human endotoxemia. - Jeremy D. Scheff; Panteleimon D. Mavroudis; Panagiota T. Foteinou; Gary An; Steve E. Calvano; John Doyle 001; Thomas E. Dick; Stephen F. Lowry; Yoram Vodovotz; Ioannis P. Androulakis (J. Comput. Phys., 2013)

Hybrid Equation/Agent-Based Model of Ischemia-Induced Hyperemia and Pressure Ulcer Formation Predicts Greater Propensity to Ulcerate in Subjects with Spinal Cord Injury. - Alexey Solovyev; Qi Mi; Yi-Ting Tzen; David M. Brienza; Yoram Vodovotz (PLoS Comput. Biol., 2013)

Parameter discovery for stochastic computational models in systems biology using Bayesian model checking. - Faraz Hussain 001; Christopher James Langmead; Qi Mi; Joyeeta Dutta-Moscato; Yoram Vodovotz; Sumit Kumar Jha 001 (ICCABS, 2014)

A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury. - Cordelia Ziraldo; Alexey Solovyev; Ana Allegretti; Shilpa Krishnan; M. Kristi Henzel; Gwendolyn A. Sowa; David M. Brienza; Gary An; Qi Mi; Yoram Vodovotz (PLoS Comput. Biol., 2015)

Automated parameter estimation for biological models using Bayesian statistical model checking. - Faraz Hussain 001; Christopher J. Langmead; Qi Mi; Joyeeta Dutta-Moscato; Yoram Vodovotz; Sumit Kumar Jha 001 (BMC Bioinform., 2015)

Dynamic Data-Driven Modeling for Ex Vivo Data Analysis: Insights into Liver Transplantation and Pathobiology. - David Sadowsky; Andrew Abboud; Anthony Cyr; Lena Vodovotz; Paulo Fontes; Ruben Zamora; Yoram Vodovotz (Comput., 2017)

A computational analysis of dynamic, multi-organ inflammatory crosstalk induced by endotoxin in mice. - Ruben Zamora; Sebastian Korff; Qi Mi; Derek Barclay; Lukas Schimunek; Riccardo Zucca; Xerxes D. Arsiwalla; Richard L. Simmons; Paul F. M. J. Verschure; Timothy R. Billiar; Yoram Vodovotz (PLoS Comput. Biol., 2018)

The Impact of Stochasticity and Its Control on a Model of the Inflammatory Response. - Panteleimon D. Mavroudis; Jeremy D. Scheff; John C. Doyle 001; Yoram Vodovotz; Ioannis P. Androulakis (Comput., 2019)