PIVOT: Protein Interacions VisualizatiOn Tool. - Nir Orlev; Ron Shamir; Yosef Shiloh (Bioinform., 2004)

EXPANDER - an integrative program suite for microarray data analysis. - Ron Shamir; Adi Maron-Katz; Amos Tanay; Chaim Linhart; Israel Steinfeld; Roded Sharan; Yosef Shiloh; Ran Elkon (BMC Bioinform., 2005)

SPIKE - a database, visualization and analysis tool of cellular signaling pathways. - Ran Elkon; Rita Vesterman; Nira Amit; Igor Ulitsky; Idan Zohar; Mali Weisz; Gilad Mass; Nir Orlev; Giora Sternberg; Ran Blekhman; Jackie Assa; Yosef Shiloh; et al. (BMC Bioinform., 2008)

SPIKE: a database of highly curated human signaling pathways. - Arnon Paz; Zippora Brownstein; Yaara Ber; Shani Bialik; Eyal David; Dorit Sagir; Igor Ulitsky; Ran Elkon; Adi Kimchi; Karen B. Avraham; Yosef Shiloh; Ron Shamir (Nucleic Acids Res., 2011)