A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites. - Yoseph Barash; Gill Bejerano; Nir Friedman (WABI, 2001)

From promoter sequence to expression: a probabilistic framework. - Eran Segal; Yoseph Barash; Itamar Simon; Nir Friedman; Daphne Koller (RECOMB, 2002)

Context-Specific Bayesian Clustering for Gene Expression Data. - Yoseph Barash; Nir Friedman (J. Comput. Biol., 2002)

Modeling dependencies in protein-DNA binding sites. - Yoseph Barash; Gal Elidan; Nir Friedman; Tommy Kaplan (RECOMB, 2003)

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays. - Yoseph Barash; Elinor Dehan; Meir Krupsky; Wilbur Franklin; Marc Geraci; Nir Friedman; Naftali Kaminski (Bioinform., 2004)

CIS: compound importance sampling method for protein-DNA binding site p-value estimation. - Yoseph Barash; Gal Elidan; Tommy Kaplan; Nir Friedman (Bioinform., 2005)

Unified models for regulatory mechanisms (מודלים אחודים למנגנוני רגולציה.). - Yoseph Barash (2005)

Model-based detection of alternative splicing signals. - Yoseph Barash; Benjamin J. Blencowe; Brendan J. Frey (Bioinform., 2010)

Deciphering the splicing code. - Yoseph Barash; John A. Calarco; Weijun Gao; Qun Pan 001; Xinchen Wang; Ofer Shai; Benjamin J. Blencowe; Brendan J. Frey (Nat., 2010)

Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context. - Hui Yuan Xiong; Yoseph Barash; Brendan J. Frey (Bioinform., 2011)

Integrative deep models for alternative splicing. - Anupama Jha; Matthew R. Gazzara; Yoseph Barash (Bioinform., 2017)

MAJIQ-SPEL: web-tool to interrogate classical and complex splicing variations from RNA-Seq data. - Christopher J. Green; Matthew R. Gazzara; Yoseph Barash (Bioinform., 2018)

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates. - Scott S. Norton; Jorge Vaquero-Garcia; Nicholas F. Lahens; Gregory R. Grant; Yoseph Barash (Bioinform., 2018)