A Method for Constructing Disk-based Indexes for 3-D Protein Structure Databases. - Yoshifumi Takahashi; Susumu Kuroki; Keiichi Tamura; Hajime Kitakami (IKE, 2009)

Mining Minimum Generalized Set Based on Multiple Alignments from Mismatch Cluster. - Kazuya Miyahara; Hajime Kitakami; Yoshifumi Takahashi; Keiichi Tamura; Susumu Kuroki (BIOCOMP, 2010)

Searching for Index-based Similar Substructure Using RMSD in Protein Structure Databases. - Yoshifumi Takahashi; Susumu Kuroki; Keiichi Tamura; Hajime Kitakami (IKE, 2010)

Parallel processing of approximate sequence matching using disk-based suffix tree on multi-core CPU. - Yosuke Watanuki; Keiichi Tamura; Hajime Kitakami; Yoshifumi Takahashi (IWCIA, 2013)

Population-based Modified Extremal Optimization for Contact Map Overlap Maximization Problem. - Akihiro Nakada; Keiichi Tamura; Hajime Kitakami; Yoshifumi Takahashi (IIAI-AAI, 2013)

A new distributed modified extremal optimization for optimizing protein structure alignment. - Keiichi Tamura; Hajime Kitakami; Tatsuhiro Sakai; Yoshifumi Takahashi (IWCIA, 2015)