Decoding time-varying calcium signals by the postsynaptic biochemical network: Computer simulations of molecular kinetics. - Yoshihisa Kubota; James M. Bower (Neurocomputing, 1999)

A model of magnetic stimulation of neocortical neurons. - Yukiyasu Kamitani; Vidya M. Bhalodia; Yoshihisa Kubota; Shinsuke Shimojo (Neurocomputing, 2001)

Transient Versus Asymptotic Dynamics of CaM Kinase II: Possible Roles of Phosphatase. - Yoshihisa Kubota; James M. Bower (J. Comput. Neurosci., 2001)

A novel Monte Carlo simulation for molecular interactions and diffusion in postsynaptic spines. - Yoshihisa Kubota; Tara R. Gaertner; John A. Putkey; M. Neal Waxham (Neurocomputing, 2005)

Dissecting cooperative calmodulin binding to CaM kinase II: a detailed stochastic model. - Michael J. Byrne; John A. Putkey; M. Neal Waxham; Yoshihisa Kubota (J. Comput. Neurosci., 2009)

Cellular Dynamic Simulator: An Event Driven Molecular Simulation Environment for Cellular Physiology. - Michael J. Byrne; M. Neal Waxham; Yoshihisa Kubota (Neuroinformatics, 2010)

Lobe Specific Ca2+-Calmodulin Nano-Domain in Neuronal Spines: A Single Molecule Level Analysis. - Yoshihisa Kubota; M. Neal Waxham (PLoS Comput. Biol., 2010)

The impacts of geometry and binding on CaMKII diffusion and retention in dendritic spines. - Michael J. Byrne; M. Neal Waxham; Yoshihisa Kubota (J. Comput. Neurosci., 2011)