The Differential Model: A Model for Animating Transformation of Objects Using Differential Inforamtion. - Yoshihisa Shinagawa; Tosiyasu L. Kunii (Modeling in Computer Graphics, 1991)

Constructing a Reeb graph automatically from cross sections. - Yoshihisa Shinagawa; Tosiyasu L. Kunii (IEEE Computer Graphics and Applications, 1991)

Surface coding based on Morse theory. - Yoshihisa Shinagawa; Tosiyasu L. Kunii; Yannick L. Kergosien (IEEE Computer Graphics and Applications, 1991)

The homotopy model: a generalized model for smooth surface generation from cross sectional data. - Yoshihisa Shinagawa; Tosiyasu L. Kunii (Vis. Comput., 1991)

Visualizing Highly Abstract Mathematical Concepts: A Case Study in Animation of Homology Groups. - Tosiyasu L. Kunii; Hirohisa Hioki; Yoshihisa Shinagawa (MMM, 1993)

Research issues in modeling complex object shapes. - Tosiyasu L. Kunii; Yoshihisa Shinagawa (IEEE Computer Graphics and Applications, 1994)

Topology of noncompact integrable Variants of Suslov Problem. - G. G. Okuneva; Tosiyasu L. Kunii; Yoshihisa Shinagawa (Int. J. Shape Model., 1994)

Homotopy solid fillet for Joining Objects. - Chiew-Lan Tai; Kia-Fock Loe; Tosiyasu L. Kunii; Yoshihisa Shinagawa (Int. J. Shape Model., 1994)

Evaluation of human jaw articulation [computer animation]. - Tosiyasu L. Kunii; Karol Myszkowski; Oleg G. Okunev; Hirobumi Nishida; Yoshihisa Shinagawa; Masumi Ibusuki (CA, 1995)

Modeling contact of two complex objects, with an application to characterizing dental articulations. - Yoshihisa Shinagawa; Tosiyasu L. Kunii; Hideyuki Sato; Masumi Ibusuki (Comput. Graph., 1995)

Algorithms for Extracting Correct Critical Points and Constructing Topological Graphs from Discrete Geographical Elevation Data. - Shigeo Takahashi; Tetsuya Ikeda; Yoshihisa Shinagawa; Tosiyasu L. Kunii; Minoru Ueda (Comput. Graph. Forum, 1995)

Issues in Storage and Retrieval of Multimedia Data. - Tosiyasu L. Kunii; Yoshihisa Shinagawa; Raymond A. Paul; M. F. Kahn; Ashfaq A. Khokhar (Multim. Syst., 1995)

Data Models for Metrics-Based Project Management Systems. - Raymond A. Paul; C. L. Chee; Tosiyasu L. Kunii; Yoshihisa Shinagawa (COMPSAC, 1996)

Object-Oriented Framework for Metrics Guided Risk Management. - Raymond A. Paul; Yoshihisa Shinagawa; Young Francis Day; M. Farrukh Khan; Arif Ghafoor (COMPSAC, 1996)

A Visual Query Interface for Software Metrics Databases. - Raymond A. Paul; Azam Khan; Arif Ghafoor; Young Francis Day; Yoshihisa Shinagawa (SEKE, 1996)

Shape Modeling and Shape Analysis Based on Singularities. - Yoshihisa Shinagawa; Tosiyasu L. Kunii; Alexander G. Belyaev; Taketo Tsukioka (Int. J. Shape Model., 1996)

Capturing and analyzing stability of human body motions using video cameras. - Yoshihisa Shinagawa; Jun-ichi Nakajima; Tosiyasu L. Kunii; Kazuhiro Hara (CA, 1997)

Characterizing Images Based on Lines for Image Indexing. - Tosiyasu L. Kunii; Shuta Murakami; Yoshihisa Shinagawa; M. Ohga (Computer Graphics International, 1997)

Curve and Surface Design Using Multiresolution Constraints. - Shigeo Takahashi; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Computer Graphics International, 1997)

Object-Oriented Evolutionary Database Design for Software Metrics Data. - Raymond A. Paul; Tosiyasu L. Kunii; Yoshihisa Shinagawa; Arif Ghafoor (COMPSAC, 1997)

A Feature-Based Approach for Smooth Surfaces. - Shigeo Takahashi; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Symposium on Solid Modeling and Applications, 1997)

Recognizing three-dimensional shapes while measuring them. - Yoshihisa Shinagawa; Hirohisa Hioki; Junko Morimoto; Tosiyasu L. Kunii (Shape Modeling International, 1997)

A Muscle-based Feed-forward Controller of the Human Body. - Taku Komura; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Comput. Graph. Forum, 1997)

Multiresolution Volume Data Structure for Shape Modeling. - Nobuyuki Umezu; Yoshihisa Shinagawa; Tosiyasu L. Kunii (MMM, 1998)

A Reeb graph-based representation for non-sequential construction of topologically complex shapes. - Chiew-Lan Tai; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Comput. Graph., 1998)

Unconstrained Automatic Image Matching Using Multiresolutional Critical-Point Filters. - Yoshihisa Shinagawa; Tosiyasu L. Kunii (IEEE Trans. Pattern Anal. Mach. Intell., 1998)

Continuous-resolution-level constraints in variational design of multiresolution shapes. - Shigeo Takahashi; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Vis. Comput., 1998)

Calculation and visualization of the dynamic ability of the human body. - Taku Komura; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Comput. Animat. Virtual Worlds, 1999)

Editorial. - Nadia Magnenat-Thalmann; Yoshihisa Shinagawa; Hung Chuan Teh (Comput. Animat. Virtual Worlds, 1999)

Software Metrics Knowledge and Databases for Project Management. - Raymond A. Paul; Tosiyasu L. Kunii; Yoshihisa Shinagawa; Muhammad Farrukh Khan (IEEE Trans. Knowl. Data Eng., 1999)

Creating and retargetting motion by the musculoskeletal human body model. - Taku Komura; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Vis. Comput., 2000)

An Inverse Kinematics Method Based on Muscle Dynamics. - Taku Komura; Yoshihisa Shinagawa; Tosiyasu L. Kunii (Computer Graphics International, 2001)

Motion Conversion based on the Musculoskeletal System. - Taku Komura; Yoshihisa Shinagawa (Graphics Interface, 2001)

Topology matching for fully automatic similarity estimation of 3D shapes. - Masaki Hilaga; Yoshihisa Shinagawa; Taku Komura; Tosiyasu L. Kunii (SIGGRAPH, 2001)

Special Issue on Pacific Graphics 2000. - Brian A. Barsky; Yoshihisa Shinagawa; Wenping Wang (Graph. Model., 2001)

Topological Morphing Using Reeb Graphs. - Pizzanu Kanonchayos; Tomoyuki Nishita; Yoshihisa Shinagawa; Tosiyasu L. Kunii (CW, 2002)

NiceMeetVR: facing professional baseball pitchers in the virtual batting cage. - Taku Komura; Atsushi Kuroda; Yoshihisa Shinagawa (SAC, 2002)

Developing Surfaces. - Yoshihisa Shinagawa; Ryoji Kawamichi; Tosiyasu L. Kunii; Shigeru Owada (Shape Modeling International, 2002)

An inverse kinematics method for 3D figures with motion data. - Taku Komura; Atsushi Kuroda; Shunsuke Kudoh; Chiew-Lan Tai; Yoshihisa Shinagawa (Computer Graphics International, 2003)

Accurate and robust line segment extraction by analyzing distribution around peaks in Hough space. - Yasutaka Furukawa; Yoshihisa Shinagawa (Comput. Vis. Image Underst., 2003)

Enumeration of Contour Correspondence. - Shigeru Owada; Yoshihisa Shinagawa; Frank Nielsen (Int. J. Image Graph., 2003)

Creating VR Scenes Using Fully Automatic Derivation of Motion Vectors. - Kensuke Habuka; Yoshihisa Shinagawa (VR, 2004)

Image Interpolation Using Enhanced Multiresolution Critical-Point Filters. - Kensuke Habuka; Yoshihisa Shinagawa (Int. J. Comput. Vis., 2004)

Plausible image matching: determining dense and smooth mapping between images without a priori knowledge. - Shuntaro Yamazaki; Katsushi Ikeuchi; Yoshihisa Shinagawa (Int. J. Pattern Recognit. Artif. Intell., 2005)

Simulating pathological gait using the enhanced linear inverted pendulum model. - Taku Komura; Akinori Nagano; Howard Leung; Yoshihisa Shinagawa (IEEE Trans. Biomed. Eng., 2005)

Learning system for human motion characters of traditional arts. - Yoshinori Maekawa; Takuya Oda; Taku Komura; Yoshihisa Shinagawa (VRST, 2006)

Construction site image retrieval based on material cluster recognition. - Ioannis K. Brilakis; Lucio Soibelman; Yoshihisa Shinagawa (Adv. Eng. Informatics, 2006)

Automatic 3-D Grayscale Volume Matching and Shape Analysis. - Gregoire Guetat; Matthieu Maitre; Laurene Joly; Sen-Lin Lai; Tzumin Lee; Yoshihisa Shinagawa (IEEE Trans. Inf. Technol. Biomed., 2006)

Video-guided motion synthesis using example motions. - Min Je Park; Min Gyu Choi; Yoshihisa Shinagawa; Sung Yong Shin (ACM Trans. Graph., 2006)

Rate-Distortion Optimal Depth Maps in the Wavelet Domain for Free-Viewpoint Rendering. - Matthieu Maitre; Yoshihisa Shinagawa; Minh N. Do (ICIP (5), 2007)

Symmetric multi-view stereo reconstruction from planar camera arrays. - Matthieu Maitre; Yoshihisa Shinagawa; Minh N. Do (CVPR, 2008)

Expanded pharmacokinetic model for population studies in breast MRI. - Vandana Mohan; Yoshihisa Shinagawa; Bing Jian; Gerardo Hermosillo (Computer-Aided Diagnosis, 2008)

Homotopic Image Pseudo-Invariants for Openset Object Recognition and Image Retrieval. - Yoshihisa Shinagawa (IEEE Trans. Pattern Anal. Mach. Intell., 2008)

Wavelet-Based Joint Estimation and Encoding of Depth-Image-Based Representations for Free-Viewpoint Rendering. - Matthieu Maitre; Yoshihisa Shinagawa; Minh N. Do (IEEE Trans. Image Process., 2008)

Untangling fibers by quotient appearance manifold mapping for grayscale shape classification. - Yoshihisa Shinagawa; Yuping Lin (ICCV, 2009)

Physical priors in virtual colonoscopy. - Hassan Rivaz; Yoshihisa Shinagawa; Jianming Liang (Computer-Aided Diagnosis, 2009)

Stratified learning of local anatomical context for lung nodules in CT images. - Dijia Wu; Le Lu 001; Jinbo Bi; Yoshihisa Shinagawa; Kim L. Boyer; Arun Krishnan; Marcos Salganicoff (CVPR, 2010)

Saliency-based rotation invariant descriptor for wrist detection in whole body CT images. - Mingchen Gao; Yiqiang Zhan; Gerardo Hermosillo Valadez; Yoshihisa Shinagawa; Dimitris N. Metaxas; Xiang Sean Zhou (ISBI, 2014)

Multi-view learning based robust collimation detection in digital radiographs. - Hongda Mao; Zhigang Peng; Frank Dennerlein; Yoshihisa Shinagawa; Yiqiang Zhan; Xiang Sean Zhou (Image Processing, 2014)

Sparse appearance model-based algorithm for automatic segmentation and identification of articulated hand bones. - Fitsum A. Reda; Zhigang Peng; Shu Liao; Yoshihisa Shinagawa; Yiqiang Zhan; Gerardo Hermosillo; Xiang Sean Zhou (Image Processing, 2014)

Computer-Assisted Medical Image Analysis Systems. - Shu Liao; Shipeng Yu; Matthias Wolf 001; Gerardo Hermosillo; Yiqiang Zhan; Yoshihisa Shinagawa; Zhigang Peng; Xiang Sean Zhou; Luca Bogoni; Marcos Salganicoff (Healthcare Data Analytics, 2015)

Bodypart Recognition Using Multi-stage Deep Learning. - Zhennan Yan; Yiqiang Zhan; Zhigang Peng; Shu Liao; Yoshihisa Shinagawa; Dimitris N. Metaxas; Xiang Sean Zhou (IPMI, 2015)

Hierarchical Latent Word Clustering. - Halid Ziya Yerebakan; Fitsum A. Reda; Yiqiang Zhan; Yoshihisa Shinagawa (CoRR, 2016)

Multi-Instance Deep Learning: Discover Discriminative Local Anatomies for Bodypart Recognition. - Zhennan Yan; Yiqiang Zhan; Zhigang Peng; Shu Liao; Yoshihisa Shinagawa; Shaoting Zhang 001; Dimitris N. Metaxas; Xiang Sean Zhou (IEEE Trans. Medical Imaging, 2016)

Document Representation Learning for Patient History Visualization. - Halid Ziya Yerebakan; Yoshihisa Shinagawa; Parmeet S. Bhatia; Yiqiang Zhan (COLING (Demos), 2018)

Supervised Understanding of Word Embeddings. - Halid Ziya Yerebakan; Parmeet S. Bhatia; Yoshihisa Shinagawa (CoRR, 2020)

MedTextSeg: A Deep Dual Sequential Model for Section Segmentation in Medical Reports. - Shaika Chowdhury; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Philip S. Yu (IEEE BigData, 2021)

Dual-Domain Cross-Iteration Squeeze-Excitation Network for Sparse Reconstruction of Brain MRI. - Xiongchao Chen; Yoshihisa Shinagawa; Zhigang Peng; Gerardo Hermosillo Valadez (CoRR, 2022)

SEAM-STRESS: A Weakly Supervised Framework for Interstitial Lung Disease Segmentation in Chest CT. - Xueqi Guo; Mohamad Abdi; Yoshihisa Shinagawa; Anna K. Jerebko; Sepehr Farhand (ISBI, 2023)

A Hierarchical Descriptor Framework for On-the-Fly Anatomical Location Matching Between Longitudinal Studies. - Halid Ziya Yerebakan; Yoshihisa Shinagawa; Mahesh Ranganath; Simon Allen-Raffl; Gerardo Hermosillo Valadez (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

Enhancing Health Data Interoperability with Large Language Models: A FHIR Study. - Yikuan Li; Hanyin Wang; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Yuan Luo 001 (CoRR, 2023)

SAMU: An Efficient and Promptable Foundation Model for Medical Image Segmentation. - Joseph Bae; Xueqi Guo; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Sepehr Farhand (MedAGI@MICCAI, 2024)

Real Time Multi Organ Classification on Computed Tomography Images. - Halid Ziya Yerebakan; Yoshihisa Shinagawa; Gerardo Hermosillo Valadez (DEMI@MICCAI, 2024)

Evaluating unsupervised contrastive learning framework for MRI sequences classification. - Yuli Wang; Kritika Iyer; Sepehr Farhand; Yoshihisa Shinagawa (CoRR, 2025)

BodyGPS: Anatomical Positioning System. - Halid Ziya Yerebakan; Kritika Iyer; Xueqi Guo; Yoshihisa Shinagawa; Gerardo Hermosillo Valadez (CoRR, 2025)