Statistical representations of microbial systems. - Yoshiki Vazquez-Baeza (2017)

Theoretical Knowledge Graph Reasoning via Ending Anchored Rules. - Canlin Zhang; Yannis Katsis; Yoshiki Vazquez-Baeza; Andrew Bartko; Ho-Cheol Kim; Chun-Nan Hsu (CoRR, 2020)

Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data. - Lingjing Jiang; Niina Haiminen; Anna Paola Carrieri; Shi Huang; Yoshiki Vazquez-Baeza; Laxmi Parida; Ho-Cheol Kim; Austin D. Swafford; Rob Knight 001; Loki Natarajan (CoRR, 2020)

Abstractified Multi-instance Learning (AMIL) for Biomedical Relation Extraction. - William Hogan; Molly Huang; Yannis Katsis; Tyler Baldwin; Ho-Cheol Kim; Yoshiki Vazquez-Baeza; Andrew Bartko; Chun-Nan Hsu (AKBC, 2021)

BLAR: Biomedical Local Acronym Resolver. - William Hogan; Yoshiki Vazquez-Baeza; Yannis Katsis; Tyler Baldwin; Ho-Cheol Kim; Chun-Nan Hsu (BioNLP@NAACL-HLT, 2021)

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. - Matthew R. Dillon; Evan Bolyen; Anja Adamov; Aeriel Belk; Emily Borsom; Zachary Burcham; Justine W. Debelius; Heather Deel; Alex Emmons; Mehrbod Estaki; Chloe Herman; Christopher R. Keefe; et al. (PLoS Comput. Biol., 2021)

Theoretical Rule-based Knowledge Graph Reasoning by Connectivity Dependency Discovery. - Canlin Zhang; Chun-Nan Hsu; Yannis Katsis; Ho-Cheol Kim; Yoshiki Vazquez-Baeza (IJCNN, 2022)