MoRFPred_en: Sequence-based prediction of MoRFs using an ensemble learning strategy. - Chun Fang; Yoshitaka Moriwaki; Caihong Li; Kentaro Shimizu (J. Bioinform. Comput. Biol., 2019)

Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method. - Chun Fang; Yoshitaka Moriwaki; Aikui Tian; Caihong Li; Kentaro Shimizu (J. Bioinform. Comput. Biol., 2019)

EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation. - Keisuke Yanagisawa; Yoshitaka Moriwaki; Tohru Terada; Kentaro Shimizu (J. Chem. Inf. Model., 2021)

Prediction of protein mononucleotide binding sites using AlphaFold2 and machine learning. - Shohei Yamaguchi; Haruka Nakashima; Yoshitaka Moriwaki; Tohru Terada; Kentaro Shimizu (Comput. Biol. Chem., 2022)

Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides. - Kano Hasegawa; Yoshitaka Moriwaki; Tohru Terada; Cao Wei; Kentaro Shimizu (J. Bioinform. Comput. Biol., 2022)