Efficient Symplectic-Energy-Momentum Integration of Hamiltonian Dynamical Systems. - Yosi Shibberu (CSC, 2009)

Intrinsic Contact Geometry of Protein Dynamics. - Yosi Shibberu; Mark Brandt; David Cooper (BIOCOMP, 2010)

Fast Protein Structure Alignment. - Yosi Shibberu; Allen Holder; Kyla Lutz (ISBRA, 2010)

A Spectral Approach to Protein Structure Alignment. - Yosi Shibberu; Allen Holder (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

A Data-driven Approach Towards Human-robot Collaborative Problem Solving in a Shared Space. - Michael Wollowski; Carlotta A. Berry; Ryder C. Winck; Alan Jern; David Voltmer; Alan Chiu; Yosi Shibberu (CoRR, 2017)