GenericBioMatch: A novel generic pattern match algorithm for biological sequences. - Youlian Pan; Fazel Famili (CSB, 2003)

Selection of Putative Cis-Regulatory Motifs through Regional and Global Conservation. - Youlian Pan; Brandon Smith; Hung Fang; A. Fazel Famili; Marianna Sikorska; P. Roy Walker (CSB, 2004)

Discovery of Functional Genes for Systemic Acquired Resistance in arabidopsis Thaliana through Integrated Data Mining. - Youlian Pan; Jeffrey D. Pylatuik; Junjun Ouyang; A. Fazel Famili; Pierre R. Fobert (J. Bioinform. Comput. Biol., 2004)

Modular Neural Networks and their Application in exon Prediction. - Youlian Pan; Christoph W. Sensen (Advances in Bioinformatics and Its Applications, 2005)

Prediction of Co-Regulated Gene Groups through Gene Ontology. - Zuojian Tang; Sieu Phan; Youlian Pan; A. Fazel Famili (CIBCB, 2007)

A novel pattern based clustering methodology for time-series microarray data. - Sieu Phan; Fazel Famili; Zuojian Tang; Youlian Pan; Ziying Liu; Junjun Ouyang; Anne E. G. Lenferink; Maureen D. McCourt O'Connor (Int. J. Comput. Math., 2007)

Goal Driven Analysis of cDNA Microarray Data. - Youlian Pan; Jitao Zou; Yi Huang; Ziying Liu; Sieu Phan; Fazel Famili (CIBCB, 2009)

Towards the reconstruction of Brassica napus seed development FA metabolism dynamic regulatory map. - Alain B. Tchagang; Hugo Bérubé; Ziying Liu; Sieu Phan; Fazel Famili; Youlian Pan (GENSiPS, 2009)

Towards a temporal modeling of the genetic network controlling Systemic Acquired Resistance in Arabidopsis thaliana. - Alain B. Tchagang; Heather Shearer; Sieu Phan; Hugo Bérubé; Fazel Famili; Pierre R. Fobert; Youlian Pan (CIBCB, 2010)

Data Integration and Knowledge Discovery in Life Sciences. - Fazel Famili; Sieu Phan; François Fauteux; Ziying Liu; Youlian Pan (IEA/AIE (3), 2010)

Integrative Data Mining in Functional Genomics of Brassica napus and Arabidopsis thaliana. - Youlian Pan; Alain B. Tchagang; Hugo Bérubé; Sieu Phan; Heather Shearer; Ziying Liu; Pierre R. Fobert; Fazel Famili (IEA/AIE (3), 2010)

The impact of gene expression analysis on the classification and prediction of patients' medical conditions. - Fazel Famili; Sieu Phan; Ziying Liu; Youlian Pan (ICDM (Poster and Industry Proceedings), 2010)

GOAL: A software tool for assessing biological significance of genes groups. - Alain B. Tchagang; Alexander Gawronski; Hugo Bérubé; Sieu Phan; Fazel Famili; Youlian Pan (BMC Bioinform., 2010)

A Multi-Strategy Approach to Informative Gene Identification from Gene Expression Data. - Ziying Liu; Sieu Phan; Fazel Famili; Youlian Pan; Anne E. G. Lenferink; Christiane Cantin; Catherine Collins; Maureen D. McCourt O'Connor (J. Bioinform. Comput. Biol., 2010)

Biclustering of DNA Microarray Data: Theory, Evaluation, and Applications. - Alain B. Tchagang; Youlian Pan; Fazel Famili; Ahmed H. Tewfik; Panayiotis V. Benos (Handbook of Research on Computational and Systems Biology, 2011)

Utilization of gene ontology in semi-supervised clustering. - Duong Dai Doan; Yunli Wang; Youlian Pan (CIBCB, 2011)

Mining biological information from 3D short time-series gene expression data: the OPTricluster algorithm. - Alain B. Tchagang; Sieu Phan; Fazel Famili; Heather Shearer; Pierre R. Fobert; Yi Huang; Jitao Zou; Daiqing Huang; Adrian Cutler; Ziying Liu; Youlian Pan (BMC Bioinform., 2012)

A generic model of transcriptional regulatory networks: Application to plants under abiotic stress. - Alain B. Tchagang; Sieu Phan; Fazel Famili; Youlian Pan; Adrian Cutler; Jitao Zou (GENSiPS, 2013)

Semi-supervised consensus clustering for gene expression data analysis. - Yunli Wang; Youlian Pan (BioData Min., 2014)

Subspace Clustering of DNA Microarray Data: Theory, Evaluation, and Applications. - Alain B. Tchagang; Fazel Famili; Youlian Pan (Int. J. Comput. Model. Algorithms Medicine, 2014)

Digitization of trait representation in microarray data analysis of wheat infected by fusarium graminearum. - Youlian Pan; Thérèse Ouellet; Sieu Phan; Alain B. Tchagang; François Fauteux; Dan Tulpan (CIBCB, 2015)

Integration of 3D gene expression patterns and gene regulatory networks for clinical applications in epithelial ovarian cancer. - Alain B. Tchagang; François Fauteux; Youlian Pan (BHI, 2016)

Prior knowledge guided eQTL mapping for identifying candidate genes. - Yunli Wang; Rene Richard; Youlian Pan (BMC Bioinform., 2016)

Bioinformatics identification of new targets for improving low temperature stress tolerance in spring and winter wheat. - Alain B. Tchagang; François Fauteux; Dan Tulpan; Youlian Pan (BMC Bioinform., 2017)

Personalized prediction of genes with tumor-causing somatic mutations based on multi-modal deep Boltzmann machine. - Yifeng Li 001; François Fauteux; Jinfeng Zou; André Nantel; Youlian Pan (Neurocomputing, 2019)

Multiclass Nonnegative Matrix Factorization for Comprehensive Feature Pattern Discovery. - Yifeng Li 001; Youlian Pan; Ziying Liu (IEEE Trans. Neural Networks Learn. Syst., 2019)

Handling Sparse Longitudinal Data with Irregular Missing Data - Analysis of Fecal Coliform Bacteria Data. - Shuai You; Xiaolin Huang; Li Xing; Youlian Pan; Xuekui Zhang (CIBCB, 2022)

A computational analysis of potential aortic dilation induced by the hemodynamic effects of bicuspid aortic valve phenotypes. - Qianwen Hou; Keyi Tao; Tianming Du; Hongge Wei; Honghui Zhang; Shiliang Chen; Youlian Pan; Aike Qiao (Comput. Methods Programs Biomed., 2022)