Correlation of Influenza Virus Excess Mortality with Antigenic Variation: Application to Rapid Estimation of Influenza Mortality Burden. - Aiping Wu; Yousong Peng; Xiangjun Du; Yuelong Shu; Taijiao Jiang (PLoS Comput. Biol., 2010)

Prediction of influenza epidemics at the province level in China using search query from "Haosou". - Yuanqiang Zou; Yousong Peng; Li Lu; Taijiao Jiang; Lizong Deng (FSKD, 2015)

PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences. - Yousong Peng; Lei Yang 002; Honglei Li 002; Yuanqiang Zou; Lizong Deng; Aiping Wu; Xiangjun Du; Dayan Wang; Yuelong Shu; Taijiao Jiang (Bioinform., 2016)

Predicting the Antigenic Variant of Human Influenza A(H3N2) Virus with a Stacked Auto-Encoder Model. - Zhiying Tan; Beibei Xu; Kenli Li 001; Taijiao Jiang; Yousong Peng (ICPCSEE (2), 2017)

Prediction of Cell Specific O-GalNAc Glycosylation in Human. - Yuanqiang Zou; Kenli Li 001; Taijiao Jiang; Yousong Peng (ICPCSEE (2), 2017)

cooccurNet: an R package for co-occurrence network construction and analysis. - Yuanqiang Zou; Zhiqiang Wu 001; Lizong Deng; Aiping Wu; Fan Wu 016; Kenli Li 001; Taijiao Jiang; Yousong Peng (Bioinform., 2017)

RAEdb: a database of enhancers identified by high-throughput reporter assays. - Zena Cai; Ya Cui; Zhiying Tan; Gaihua Zhang; Zhongyang Tan; Xinlei Zhang; Yousong Peng (Database J. Biol. Databases Curation, 2019)

Cell membrane proteins with high N-glycosylation, high expression and multiple interaction partners are preferred by mammalian viruses as receptors. - Zheng Zhang; Zhaozhong Zhu; Wenjun Chen; Zena Cai; Beibei Xu; Zhiying Tan; Aiping Wu; Xingyi Ge; Xinhong Guo; Zhongyang Tan; Zanxian Xia; Haizhen Zhu; et al. (Bioinform., 2019)

FluPhenotype - a one-stop platform for early warnings of the influenza A virus. - Congyu Lu; Zena Cai; Yuanqiang Zou; Zheng Zhang; Wenjun Chen; Lizong Deng; Xiangjun Du; Aiping Wu; Lei Yang 002; Dayan Wang; Yuelong Shu; Taijiao Jiang; et al. (Bioinform., 2020)

Phage protein receptors have multiple interaction partners and high expressions. - Zheng Zhang; Fen Yu; Yuanqiang Zou; Ye Qiu; Aiping Wu; Taijiao Jiang; Yousong Peng (Bioinform., 2020)

VirusCircBase: a database of virus circular RNAs. - Zena Cai; Yunshi Fan; Zheng Zhang; Congyu Lu; Zhaozhong Zhu; Taijiao Jiang; Tongling Shan; Yousong Peng (Briefings Bioinform., 2021)

Identification and characterization of circRNAs encoded by MERS-CoV, SARS-CoV-1 and SARS-CoV-2. - Zena Cai; Congyu Lu; Jun He; Li Liu; Yuanqiang Zou; Zheng Zhang; Zhaozhong Zhu; Xingyi Ge; Aiping Wu; Taijiao Jiang; Heping Zheng; Yousong Peng (Briefings Bioinform., 2021)

Compositional diversity and evolutionary pattern of coronavirus accessory proteins. - Jingzhe Shang; Na Han; Ziyi Chen; Yousong Peng; Liang Li; Hangyu Zhou; Chengyang Ji; Jing Meng; Taijiao Jiang; Aiping Wu (Briefings Bioinform., 2021)

vsRNAfinder: a novel method for identifying high-confidence viral small RNAs from small RNA-Seq data. - Zena Cai; Ping Fu; Ye Qiu; Aiping Wu; Gaihua Zhang; Yirong Wang; Taijiao Jiang; Xing-Yi Ge; Haizhen Zhu; Yousong Peng (Briefings Bioinform., 2022)

An atlas of human viruses provides new insights into diversity and tissue tropism of human viruses. - Sifan Ye; Congyu Lu; Ye Qiu; Heping Zheng; Xingyi Ge; Aiping Wu; Zanxian Xia; Taijiao Jiang; Haizhen Zhu; Yousong Peng (Bioinform., 2022)

VIGA: a one-stop tool for eukaryotic virus identification and genome assembly from next-generation-sequencing data. - Ping Fu; Yifan Wu; Zhiyuan Zhang; Ye Qiu; Yirong Wang; Yousong Peng (Briefings Bioinform., 2023)

Comprehensive Characterization of the Integrin Family Across 32 Cancer Types. - Cheng Zou; Jinwei Zhu; Jiangling Xiong; Yu Tian; Yousong Peng; Edwin Cheung; Dingxiao Zhang (Genom. Proteom. Bioinform., 2024)

PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network. - Jing Meng; Jingze Liu; Wenkai Song; Honglei Li; Jiangyuan Wang; Le Zhang 004; Yousong Peng; Aiping Wu; Taijiao Jiang (Briefings Bioinform., 2024)

PREDAC-FluB: predicting antigenic clusters of seasonal influenza B viruses with protein language model embedding based convolutional neural network. - Wenping Xie; Jingze Liu; Chuan Wang; Jiangyuan Wang; Wenjie Han; Yousong Peng; Xiangjun Du; Jing Meng; Kang Ning 001; Taijiao Jiang (Briefings Bioinform., 2025)