iPath3.0: interactive pathways explorer v3. - Youssef Darzi; Ivica Letunic; Peer Bork; Takuji Yamada (Nucleic Acids Res., 2018)

FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization. - Youssef Darzi; Yuta Yamate; Takuji Yamada (Bioinform., 2019)

Enteropathway: the metabolic pathway database for the human gut microbiota. - Hirotsugu Shiroma; Youssef Darzi; Etsuko Terajima; Zenichi Nakagawa; Hirotaka Tsuchikura; Naoki Tsukuda; Yuki Moriya; Shujiro Okuda; Susumu Goto; Takuji Yamada (Briefings Bioinform., 2024)