nCal: an R package for non-linear calibration. - Youyi Fong; Krisztian Sebestyen; Xuesong Yu; Peter Gilbert; Steve Self (Bioinform., 2013)

Quality control, analysis and secure sharing of Luminex(R) immunoassay data using the open source LabKey Server platform. - Josh Eckels; Cory Nathe; Elizabeth K. Nelson; Sara G. Shoemaker; Elizabeth Nostrand; Nicole L. Yates; Vicki C. Ashley; Linda J. Harris; Mark Bollenbeck; Youyi Fong; Georgia D. Tomaras; Britt Piehler (BMC Bioinform., 2013)

chngpt: threshold regression model estimation and inference. - Youyi Fong; Ying Huang; Peter B. Gilbert; Sallie R. Permar (BMC Bioinform., 2017)

Forward Stepwise Deep Autoencoder-Based Monotone Nonlinear Dimensionality Reduction Methods. - Youyi Fong; Jun Xu (J. Comput. Graph. Stat., 2021)

Improving random forest predictions in small datasets from two-phase sampling designs. - Sunwoo Han; Brian D. Williamson; Youyi Fong (BMC Medical Informatics Decis. Mak., 2021)

GeM-LR: Discovering predictive biomarkers for small datasets in vaccine studies. - Lin Lin 003; Rachel L. Spreng; Kelly E. Seaton; S. Moses Dennison; Lindsay C. Dahora; Daniel J. Schuster; Sheetal Sawant; Peter B. Gilbert; Youyi Fong; Neville Kisalu; Andrew J. Pollard; Georgia D. Tomaras; et al. (PLoS Comput. Biol., 2024)

Optimizing deep learning-based segmentation of densely packed cells using cell surface markers. - Sunwoo Han; Khamsone Phasouk; Jia Zhu; Youyi Fong (BMC Medical Informatics Decis. Mak., 2024)