Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads. - Jorge Duitama; Justin Kennedy; Sanjiv Dinakar; Yözen Hernández; Yufeng Wu; Ion I. Mandoiu (BMC Bioinform., 2011)

A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm. - Gary Benson; Yözen Hernández; Joshua Loving (CPM, 2013)

BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm. - Joshua Loving; Yözen Hernández; Gary Benson (Bioinform., 2014)

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines. - Yözen Hernández; Rocky Bernstein; Pedro E. Pagan; Levy Vargas; William McCaig; Girish Ramrattan; Saymon Akther; Amanda Larracuente; Lia Di; Filipe G. Vieira; Wei-Gang Qiu (BMC Bioinform., 2018)

A study of the variability of minisatellite tandem repeat loci in the human genome based on high-throughput sequencing data - Yözen Hernández (2019)