Artificial neural network method for discriminating coding regions of eukaryotic genes. - Yudong Cai 001; Changqing Chen (Comput. Appl. Biosci., 1995)

Support Vector Machines for predicting protein structural class. - Yu-Dong Cai 001; Xiao-Jun Liu; Xue-biao Xu; Guo-Ping Zhou (BMC Bioinform., 2001)

Artificial Neural Network Model for Predicting Protein Subcellular Location. - Yu-Dong Cai 001; Xiao-Jun Liu; Kuo-Chen Chou (Comput. Chem., 2002)

Prediction of Protein Structural Classes by Support Vector Machines. - Yu-Dong Cai 001; Xiao-Jun Liu; Xue-biao Xu; Kuo-Chen Chou (Comput. Chem., 2002)

Artificial Neural Network Method for Predicting Protein Secondary Structure Content. - Yu-Dong Cai 001; Xiao-Jun Liu; Xue-biao Xu; Kuo-Chen Chou (Comput. Chem., 2002)

Support vector machines for predicting HIV protease cleavage sites in protein. - Yu-Dong Cai 001; Xiao-Jun Liu; Xue-biao Xu; Kuo-Chen Chou (J. Comput. Chem., 2002)

Prediction of protein secondary structure content by artificial neural network. - Yu-Dong Cai 001; Xiao-Jun Liu; Kuo-Chen Chou (J. Comput. Chem., 2003)

Predicting subcellular localization of proteins in a hybridization space. - Yu-Dong Cai 001; Kuo-Chen Chou (Bioinform., 2004)

Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. - Yu-Dong Cai 001; Andrew J. Doig (Bioinform., 2004)

Predicting protein localization in budding Yeast. - Kuo-Chen Chou; Yu-Dong Cai 001 (Bioinform., 2005)

Prediction of Membrane Protein Types by Incorporating Amphipathic Effects. - Kuo-Chen Chou; Yu-Dong Cai 001 (J. Chem. Inf. Model., 2005)

Demonstration of two novel methods for predicting functional siRNA efficiency. - Peilin Jia; Tieliu Shi; Yudong Cai 001; Yixue Li (BMC Bioinform., 2006)

Predicting O-glycosylation sites in mammalian proteins by using SVMs. - Sujun Li; Boshu Liu; Rong Zeng; Yudong Cai 001; Yixue Li (Comput. Biol. Chem., 2006)

Operon prediction based on SVM. - Guoqing Zhang 006; Zhi-Wei Cao; Qingming Luo; Yu-Dong Cai 001; Yixue Li (Comput. Biol. Chem., 2006)

An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. - Ziliang Qian; Lingyi Lu; Xiao-Jun Liu; Yu-Dong Cai 001; Yixue Li (Bioinform., 2007)

ECS: An automatic enzyme classifier based on functional domain composition. - Lingyi Lu; Ziliang Qian; Yu-Dong Cai 001; Yixue Li (Comput. Biol. Chem., 2007)

Predicting Protein-Protein Interactions with Pseudo Amino Acid Composition. - Yu-Dong Cai 001; Guo-Ping Zhou (BMEI (1), 2008)

A committee of NNA classifiers for the prediction of the binding between miRNAs and the target genes using a novel coding method. - Yudong Cai 001; ZhiSong He; Kaiyan Feng (SMC, 2009)

Multiple classifier integration for the prediction of protein structural classes. - Lei Chen 007; Lin Lu; Kairui Feng; Wenjin Li; Jie Song; Lulu Zheng; Youlang Yuan; Zhenbing Zeng; Kai-Yan Feng; Wen-Cong Lu; Yudong Cai 001 (J. Comput. Chem., 2009)

HIV-1 protease cleavage site prediction based on amino acid property. - Bing Niu; Lin Lu; Liang Liu; Tian Hong Gu; Kai-Yan Feng; Wen-Cong Lu; Yu-Dong Cai 001 (J. Comput. Chem., 2009)

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. - Lei Chen 007; Kai-Yan Feng; Yu-Dong Cai 001; Kuo-Chen Chou; Hai-Peng Li (BMC Bioinform., 2010)

Prediction of interactiveness between small molecules and enzymes by combining gene ontology and compound similarity. - Lei Chen 007; Ziliang Qian; Kaiyan Feng; Yudong Cai 001 (J. Comput. Chem., 2010)

Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles. - Tao Huang 004; Lei Chen 007; Xiao-Jun Liu; Yu-Dong Cai 001 (Neurocomputing, 2011)

Novel Computational Methods and Tools in Biomedicine and Biopharmacy. - Yudong Cai 001; Tao Huang 004; Lei Chen 007; Shan Gao; Ning Zhang 005 (Comput. Math. Methods Medicine, 2014)

Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network. - Baoman Wang; Fei Yuan 002; Xiangyin Kong; Lan-Dian Hu; Yu-Dong Cai 001 (Comput. Math. Methods Medicine, 2015)

Identifying New Candidate Genes and Chemicals Related to Prostate Cancer Using a Hybrid Network and Shortest Path Approach. - Fei Yuan 002; You Zhou 005; Meng Wang; Jing Yang 009; Kai Wu; Changhong Lu; Xiangyin Kong; Yu-Dong Cai 001 (Comput. Math. Methods Medicine, 2015)

Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method. - You Zhou 005; Tao Huang 004; Guohua Huang; Ning Zhang 005; Xiangyin Kong; Yu-Dong Cai 001 (Neurocomputing, 2016)

Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy. - Lei Chen 007; Shaopeng Wang; Yu-Hang Zhang; Jiarui Li; Zhi-Hao Xing; Jialiang Yang; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2017)

Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways. - Lei Chen 007; Yu-Hang Zhang; Guohui Lu; Tao Huang 004; Yu-Dong Cai 001 (Artif. Intell. Medicine, 2017)

Identification of transcription factors that may reprogram lung adenocarcinoma. - Chenglin Liu; Yu-Hang Zhang; Tao Huang 004; Yudong Cai 001 (Artif. Intell. Medicine, 2017)

Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells. - Lei Chen 007; Xiaoyong Pan; Tao Zeng 003; Yu-Hang Zhang; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2019)

Disease Cluster Detection and Functional Characterization. - Wei Guo; Tao Zeng 003; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2020)

Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study. - Yu-Hang Zhang; Tao Zeng 003; Xiaoyong Pan; Wei Guo; Zijun Gan; Yunhua Zhang; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2020)

Identifying Protein Subcellular Locations With Embeddings-Based node2loc. - Xiaoyong Pan; Lei Chen 007; Min Liu 020; Zhibin Niu; Tao Huang 004; Yu-Dong Cai 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Identifying allergic-rhinitis-associated genes with random-walk-based method in PPI network. - Lin Li; Feiming Huang; Yu-Hang Zhang; Yu-Dong Cai 001 (Comput. Biol. Medicine, 2024)

Identification of key genes associated with persistent immune changes and secondary immune activation responses induced by influenza vaccination after COVID-19 recovery by machine learning methods. - Jingxin Ren; Xianchao Zhou; Ke Huang; Lei Chen 007; Wei Guo; Kaiyan Feng; Tao Huang 004; Yu-Dong Cai 001 (Comput. Biol. Medicine, 2024)

Identification of key gene expression associated with quality of life after recovery from COVID-19. - Jingxin Ren; Qian Gao; Xianchao Zhou; Lei Chen 007; Wei Guo; Kaiyan Feng; Tao Huang 004; Yu-Dong Cai 001 (Medical Biol. Eng. Comput., 2024)

CMAGN: circRNA-miRNA association prediction based on graph attention auto-encoder and network consistency projection. - Anhui Yin; Lei Chen 007; Bo Zhou; Yu-Dong Cai 001 (BMC Bioinform., 2024)