Mining coherent dense subgraphs across massive biological networks for functional discovery. - Haiyan Hu; Xifeng Yan; Yu Huang 003; Jiawei Han 001; Xianghong Jasmine Zhou (ISMB (Supplement of Bioinformatics), 2005)

Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. - Fei Pan; Kiran Kamath; Kangyu Zhang; Sudip Pulapura; Avinash Achar; Juan Nunez-Iglesias; Yu Huang 003; Xifeng Yan; Jiawei Han 001; Haiyan Hu; Min Xu; Jianjun Hu; et al. (Bioinform., 2006)

Systematic discovery of functional modules and context-specific functional annotation of human genome. - Yu Huang 003; Haifeng Li; Haiyan Hu; Xifeng Yan; Michael S. Waterman; Haiyan Huang; Xianghong Jasmine Zhou (ISMB/ECCB (Supplement of Bioinformatics), 2007)

A graph-based approach to systematically reconstruct human transcriptional regulatory modules. - Xifeng Yan; Michael R. Mehan; Yu Huang 003; Michael S. Waterman; Philip S. Yu; Xianghong Jasmine Zhou (ISMB/ECCB (Supplement of Bioinformatics), 2007)