GranatumX: A Community-engaging, Modularized, and Flexible Webtool for Single-cell Data Analysis. - David G. Garmire; Xun Zhu; Aravind Mantravadi; Qianhui Huang; Breck Yunits; Yu Liu 059; Thomas K. Wolfgruber; Olivier Poirion; Tianying Zhao; Cédric Arisdakessian; Stefan Stanojevic; Lana X. Garmire (Genom. Proteom. Bioinform., 2021)

Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data. - Qianhui Huang; Yu Liu 059; Yuheng Du; Lana X. Garmire (Genom. Proteom. Bioinform., 2021)

scDeconv: an R package to deconvolve bulk DNA methylation data with scRNA-seq data and paired bulk RNA-DNA methylation data. - Yu Liu 059 (Briefings Bioinform., 2022)