DeepDualEPI: Predicting Promoter-Enhancer Interactions Based on DNA Sequence and Genomic Signals. - Tao Song 001; Haonan Song; Zhiyi Pan 003; Yuan Gao 048; Qing Yang; Xingguang Wang (BIBM, 2023)

Transformer-Based Gene Expression Levels Prediction Using Multimodal Information. - Tao Song 001; Zhiyi Pan 003; Haonan Song; Yuan Gao 048; Huanhuan Dai; Xun Wang 010 (BIBM, 2024)

scSwinTNet: A Cell Type Annotation Method for Large-Scale Single-Cell RNA-Seq Data Based on Shifted Window Attention. - Huanhuan Dai; Xiangyu Meng 005; Zhiyi Pan 003; Qing Yang; Haonan Song; Yuan Gao 048; Xun Wang 010 (IEEE J. Biomed. Health Informatics, 2025)