IFIM: a database of integrated fitness information for microbial genes. - Wen Wei; Yuan-Nong Ye; Sen Luo; Yan-Yan Deng; Dan Lin; Feng-Biao Guo (Database J. Biol. Databases Curation, 2014)

ACFIS: a web server for fragment-based drug discovery. - Ge-Fei Hao; Wen Jiang; Yuan-Nong Ye; Feng-Xu Wu; Xiao-Lei Zhu; Feng-Biao Guo; Guangfu Yang (Nucleic Acids Res., 2016)

SSER: Species specific essential reactions database. - Abraham A. Labena; Yuan-Nong Ye; Chuan Dong; Fa-Zhan Zhang; Feng-Biao Guo (BMC Syst. Biol., 2017)

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms. - Shuo Liu; Shu-Xuan Wang; Wei Liu; Chen Wang; Fa-Zhan Zhang; Yuan-Nong Ye; Candy-S. Wu; Wen-Xin Zheng; Nini Rao; Feng-Biao Guo (Database J. Biol. Databases Curation, 2020)

Sequence-Based Predicting Bacterial Essential ncRNAs Algorithm by Machine Learning. - Yuan-Nong Ye; Ding-Fa Liang; Abraham A. Labena; Zhu Zeng (Intell. Autom. Soft Comput., 2023)

Using Fully Convolutional Network to Locate Transcription Factor Binding Sites Based on DNA Sequence and Conservation Information. - Qinhu Zhang; Youhong Xu; Siguo Wang; Yong Wu; Yuan-Nong Ye; Chang-An Yuan 001; Valeriya V. Gribova; Vladimir Fedorovich Filaretov; De-Shuang Huang (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)