XSW: Accelerating Biological Database Search on Xeon Phi. - Lipeng Wang; Yuandong Chan; Xiaohui Duan; Haidong Lan; Xiangxu Meng; Weiguo Liu (IPDPS Workshops, 2014)

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters. - Haidong Lan; Yuandong Chan; Kai Xu; Bertil Schmidt; Shaoliang Peng; Weiguo Liu (BMC Bioinform., 2016)

S-Aligner: Ultrascalable Read Mapping on Sunway Taihu Light. - Xiaohui Duan; Kai Xu; Yuandong Chan; Christian Hundt 002; Bertil Schmidt; Pavan Balaji; Weiguo Liu (CLUSTER, 2017)

PUNAS: A Parallel Ungapped-Alignment-Featured Seed Verification Algorithm for Next-Generation Sequencing Read Alignment. - Yuandong Chan; Kai Xu; Haidong Lan; Weiguo Liu; Yongchao Liu; Bertil Schmidt (IPDPS, 2017)

SPECTR: Scalable Parallel Short Read Error Correction on Multi-core and Many-core Architectures. - Kai Xu; Robin Kobus; Yuandong Chan; Ping Gao 005; Xiangxu Meng; Yanjie Wei; Bertil Schmidt; Weiguo Liu (ICPP, 2018)

Fast and efficient short read mapping based on a succinct hash index. - Haowen Zhang; Yuandong Chan; Kaichao Fan; Bertil Schmidt; Weiguo Liu (BMC Bioinform., 2018)

XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters. - Zekun Yin; Hao Zhang 142; Kai Xu; Yuandong Chan; Shaoliang Peng; Xiaoning Wang; Bertil Schmidt; Weiguo Liu (HPCC/SmartCity/DSS, 2019)

Refactoring and Optimizing WRF Model on Sunway TaihuLight. - Kai Xu; Zhenya Song; Yuandong Chan; Shida Wang; Xiangxu Meng; Weiguo Liu; Wei Xue 003 (ICPP, 2019)

BGSA: a bit-parallel global sequence alignment toolkit for multi-core and many-core architectures. - Jikai Zhang; Haidong Lan; Yuandong Chan; Yuan Shang; Bertil Schmidt; Weiguo Liu (Bioinform., 2019)

SLPal: Accelerating Long Sequence Alignment on Many-Core and Multi-Core Architectures. - Xiaoming Xu; Yuandong Chan; Kai Xu; Jikai Zhang; Xiaoning Wang; Zekun Yin; Weiguo Liu (BIBM, 2020)