The design of an efficient swap mechanism for hybrid DRAM-NVM systems. - Xianzhang Chen; Edwin Hsing-Mean Sha; Weiwen Jiang; Qingfeng Zhuge; Junxi Chen; Jiejie Qin; Yuansong Zeng (EMSOFT, 2016)

Efficient wear leveling for inodes of file systems on persistent memories. - Xianzhang Chen; Edwin Hsing-Mean Sha; Yuansong Zeng; Chaoshu Yang; Weiwen Jiang; Qingfeng Zhuge (DATE, 2018)

An Efficient File System for Hybrid In-Memory NVM and Block Devices. - Yuansong Zeng; Edwin Hsing-Mean Sha; Qingfeng Zhuge; Xianzhang Chen; Zhulin Ma; Lin Wu 002 (NVMSA, 2018)

A Cylindrical Lens Antenna With Extremely Flat Beams. - Zhe Zhang 019; Shiwen Yang; Yuansong Zeng; Shiwei Qu 001; Yikai Chen (IEEE Access, 2019)

Accurately Clustering Single-cell RNA-seq data by Capturing Structural Relations between Cells through Graph Convolutional Network. - Yuansong Zeng; Xiang Zhou; Jiahua Rao; Yutong Lu; Yuedong Yang (BIBM, 2020)

scAdapt: virtual adversarial domain adaptation network for single cell RNA-seq data classification across platforms and species. - Xiang Zhou; Hua Chai; Yuansong Zeng; Huiying Zhao; Yuedong Yang (Briefings Bioinform., 2021)

A Meta-learning based Graph-Hierarchical Clustering Method for Single Cell RNA-Seq Data. - Zixiang Pan; Yuansong Zeng; Yuefan Lin; Weijiang Yu; Haokun Zhang; Yuedong Yang (BIBM, 2022)

SCdenoise: a reference-based scRNA-seq denoising method using semi-supervised learning. - Fengqi Zhong; Yuansong Zeng; Yubao Liu; Yuedong Yang (BIBM, 2022)

A robust and scalable graph neural network for accurate single-cell classification. - Yuansong Zeng; Zhuoyi Wei; Zixiang Pan; Yutong Lu; Yuedong Yang (Briefings Bioinform., 2022)

Spatial transcriptomics prediction from histology jointly through Transformer and graph neural networks. - Yuansong Zeng; Zhuoyi Wei; Weijiang Yu; Rui Yin; Yuchen Yuan; Bingling Li; Zhonghui Tang; Yutong Lu; Yuedong Yang (Briefings Bioinform., 2022)

A parameter-free deep embedded clustering method for single-cell RNA-seq data. - Yuansong Zeng; Zhuoyi Wei; Fengqi Zhong; Zixiang Pan; Yutong Lu; Yuedong Yang (Briefings Bioinform., 2022)

Identifying spatial domain by adapting transcriptomics with histology through contrastive learning. - Yuansong Zeng; Rui Yin; Mai Luo; Jianing Chen; Zixiang Pan; Yutong Lu; Weijiang Yu; Yuedong Yang (Briefings Bioinform., 2023)

Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model. - Yuansong Zeng; Zhuoyi Wei; Qianmu Yuan; Sheng Chen; Weijiang Yu; Yutong Lu; Jianzhao Gao; Yuedong Yang (Bioinform., 2023)

Graph learning of disentangled representation for accurately aligning multiple spatial slices. - Jianing Chen; Yuansong Zeng; Ningyuan Shangguan; Wenhao Zhou; Wenbing Li; Yuedong Yang (BCB, 2024)

Dual Interaction and Kernel-Diverse Network for Accurate Drug-Target Binding Affinity Prediction. - Yulong Wu; Jin Xie 005; Jing Nie 001; Jian Hu; Yuansong Zeng (BIBM, 2024)

Mamba-DTA: Drug-Target Binding Affinity Prediction with State Space Model. - Yulong Wu; Jin Xie 005; Jing Nie 001; Xiaohong Zhang 002; Yuansong Zeng (BIBM, 2024)

Accurately Deciphering Novel Cell Type in Spatially Resolved Single-Cell Data Through Optimal Transport. - Mai Luo; Yuansong Zeng; Jianing Chen; Ningyuan Shangguan; Wenhao Zhou; Yuedong Yang (ISBRA (2), 2024)

Detecting novel cell type in single-cell chromatin accessibility data via open-set domain adaptation. - Yuefan Lin; Zixiang Pan; Yuansong Zeng; Yuedong Yang; Zhiming Dai (Briefings Bioinform., 2024)

Deciphering cell types by integrating scATAC-seq data with genome sequences. - Yuansong Zeng; Mai Luo; Ningyuan Shangguan; Peiyu Shi; Junxi Feng; Jin Xu; Ken Chen 006; Yutong Lu; Weijiang Yu; Yuedong Yang (Nat. Comput. Sci., 2024)

Integrating single-cell multi-omics data through self-supervised clustering. - Yuansong Zeng; Jianing Chen; Zixiang Pan; Weijiang Yu; Yuedong Yang (Appl. Soft Comput., 2025)

BalancedDiff: Balanced Diffusion Network for High-Quality Molecule Generation. - Yulong Wu; Jin Xie 005; Jing Nie 001; Bonan Ding; Yuansong Zeng; Jiale Cao (J. Chem. Inf. Model., 2025)

SciDA: Scientific Dynamic Assessor of LLMs. - Junting Zhou; Tingjia Miao; Yiyan Liao; Qichao Wang; Zhoufutu Wen; Yanqin Wang; Yunjie Huang; Ge Yan; Leqi Wang; Yucheng Xia; Hongwan Gao; Yuansong Zeng; et al. (CoRR, 2025)