Calculation of Julia Sets by Equipotential Point Algorithm. - Yuanyuan Sun 002; Xudong Zhao; Kaining Hou (Int. J. Bifurc. Chaos, 2013)

Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods. - Xiaoxia Liu; Zhihao Yang; Ziwei Zhou; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (BIBM, 2014)

Deep graph search based disease related knowledge summarization from biomedical literature. - Xiaofang Wu; Zhihao Yang; Zhiheng Li 004; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (BIBM, 2014)

Fractal descriptor applied to the classification of HEp-2 cell patterns. - Rudan Xu; Yuanyuan Sun 002; Zhihao Yang; Bo Song; Xiaopeng Hu (BIBM, 2014)

Data integration and supervised learning based protein complex detection method. - Fengying Yu; Zhihao Yang; Xiaohua Hu 001; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (BIBM, 2014)

Biomedical event trigger detection by dependency-based word embedding. - Jian Wang 021; Jianhai Zhang; Yuan An; Hongfei Lin; Zhihao Yang; Yijia Zhang 001; Yuanyuan Sun 002 (BIBM, 2015)

Protein complex detection in PPI networks based on data integration and supervised learning method. - Fengying Yu; Zhihao Yang; Xiaohua Hu 001; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (BMC Bioinform., 2015)

A texture descriptor combining fractal and LBP complex networks. - Jundong Yan; Yuanyuan Sun 002; Yawen Guan; Xiaopeng Hu (BIBM, 2016)

Research on characteristics of noise-perturbed M-J sets based on equipotential point algorithm. - Yuanyuan Sun 002; Kaining Hou; Xudong Zhao; Zhixing Lu (Commun. Nonlinear Sci. Numer. Simul., 2016)

A diameter path based method for important node detection in complex network. - Yuanyuan Sun 002; Yawen Guan; Zhizheng Wang; Tao Zhang; Cong Guo; Xinyao Li (IECON, 2017)

Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models. - Kai Guo; Hongfei Lin; Bo Xu 009; Zhihao Yang; Jian Wang 021; Yuanyuan Sun 002; Kan Xu (ISBRA, 2017)

A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation. - Zhizheng Wang; Yuanyuan Sun 002; Yawen Guan; Yibin Zhang; Liang Yang 003; Kan Xu; Yijia Zhang 001; Hongfei Lin (BIBM, 2018)

A hybrid model based on neural networks for biomedical relation extraction. - Yijia Zhang 001; Hongfei Lin; Zhihao Yang; Jian Wang 021; Shaowu Zhang 002; Yuanyuan Sun 002; Liang Yang 003 (J. Biomed. Informatics, 2018)

Chemical-protein interaction extraction via contextualized word representations and multihead attention. - Yijia Zhang 001; Hongfei Lin; Zhihao Yang; Jian Wang 021; Yuanyuan Sun 002 (Database J. Biol. Databases Curation, 2019)

Neural network-based approaches for biomedical relation classification: A review. - Yijia Zhang 001; Hongfei Lin; Zhihao Yang; Jian Wang 021; Yuanyuan Sun 002; Bo Xu 009; Zhehuan Zhao (J. Biomed. Informatics, 2019)

Drug Repositioning for SARS-CoV-2 Based on Graph Neural Network. - Haifeng Liu 002; Hongfei Lin; Chen Shen 001; Liang Yang 003; Yuan Lin 001; Bo Xu 009; Zhihao Yang; Jian Wang 021; Yuanyuan Sun 002 (BIBM, 2020)

Joint Entity and Relation Extraction for Legal Documents with Legal Feature Enhancement. - Yanguang Chen; Yuanyuan Sun 002; Zhihao Yang; Hongfei Lin (COLING, 2020)

Exploiting sequence labeling framework to extract document-level relations from biomedical texts. - Zhiheng Li 004; Zhihao Yang; Yang Xiang 003; Ling Luo 001; Yuanyuan Sun 002; Hongfei Lin (BMC Bioinform., 2020)

BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method. - Jinzhong Ning; Jiru Li; Zhihao Yang; Yuanyuan Sun 002; Lei Wang 085; Yin Zhang 009; Hongfei Lin; Jian Wang 021 (BIBM, 2022)

Two Languages Are Better than One: Bilingual Enhancement for Chinese Named Entity Recognition. - Jinzhong Ning; Zhihao Yang; Zhizheng Wang; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (COLING, 2022)

Refining electronic medical records representation in manifold subspace. - Bolin Wang; Yuanyuan Sun 002; Yonghe Chu; Di Zhao 003; Zhihao Yang; Jian Wang 021 (BMC Bioinform., 2022)

Manifold biomedical text sentence embedding. - Bolin Wang; Yuanyuan Sun 002; Yonghe Chu; Hongfei Lin; Di Zhao 003; Liang Yang 003; Chen Shen 001; Zhihao Yang; Jian Wang 021 (Neurocomputing, 2022)

Global-locality preserving projection for word embedding. - Bolin Wang; Yuanyuan Sun 002; Yonghe Chu; Zhihao Yang; Hongfei Lin (Int. J. Mach. Learn. Cybern., 2022)

A Semantic Network Encoder for Associated Fact Prediction. - Zhizheng Wang; Yuanyuan Sun 002; Xuyang Hu; Jiafeng Zhao; Zhihao Yang; Hongfei Lin (IEEE Trans. Knowl. Data Eng., 2022)

CAILIE 1.0: A dataset for Challenge of AI in Law - Information Extraction V1.0. - Yu Cao; Yuanyuan Sun 002; Ce Xu; Chunnan Li; Jinming Du; Hongfei Lin (AI Open, 2022)

BCA: Bilinear Convolutional Neural Networks and Attention Networks for legal question answering. - Haiguang Zhang; Tongyue Zhang; Faxin Cao; Zhizheng Wang; Yuanyu Zhang; Yuanyuan Sun 002; Mark Anthony Vicente (AI Open, 2022)

OD-RTE: A One-Stage Object Detection Framework for Relational Triple Extraction. - Jinzhong Ning; Zhihao Yang; Yuanyuan Sun 002; Zhizheng Wang; Hongfei Lin (ACL (1), 2023)

ODEE: A One-Stage Object Detection Framework for Overlapping and Nested Event Extraction. - Jinzhong Ning; Zhihao Yang; Zhizheng Wang; Yuanyuan Sun 002; Hongfei Lin (IJCAI, 2023)

Local discriminative graph convolutional networks for text classification. - Bolin Wang; Yuanyuan Sun 002; Yonghe Chu; Changrong Min; Zhihao Yang; Hongfei Lin (Multim. Syst., 2023)

From Retrieval to Generation: A Simple and Unified Generative Model for End-to-End Task-Oriented Dialogue. - Zeyuan Ding; Zhihao Yang; Ling Luo 001; Yuanyuan Sun 002; Hongfei Lin (AAAI, 2024)

Biomedical Event Extraction as Semantic Segmentation. - Liangyu Gao; Zhihao Yang; Jinzhong Ning; Kai Ma; Lei Wang 085; Wei Liu; Yin Zhang 009; Ling Luo 001; Bo Xu 009; Jian Wang 021; Yumeng Yang; Zhehuan Zhao; et al. (BIBM, 2024)

Document-level Biomedical Relation Extraction Based on Relation-guided Entity-level Graphs. - Liangyu Gao; Zhihao Yang; Haixin Tan; Lei Wang 085; Wei Liu; Yin Zhang 009; Ling Luo 001; Bo Xu 009; Jian Wang 021; Yumeng Yang; Zhehuan Zhao; Yuanyuan Sun 002; et al. (BIBM, 2024)

Document Embeddings Enhance Biomedical Retrieval-Augmented Generation. - Yongle Kong; Zhihao Yang; Ling Luo 001; Zeyuan Ding; Lei Wang 085; Wei Liu; Yin Zhang 009; Bo Xu 009; Jian Wang 021; Yuanyuan Sun 002; Zhehuan Zhao; Hongfei Lin (BIBM, 2024)

Biomedical Document-level Relation Extraction with Coreference and Anaphor Graphs. - Jiru Li; Yuanyuan Sun 002; Zhihao Yang; Ling Luo 001; Lei Wang 085; Wei Liu; Yin Zhang 009; Bo Xu 009; Jian Wang 021; Yumeng Yang; Zhehuan Zhao; Hongfei Lin (BIBM, 2024)

Breaking the Boundaries: A Unified Framework for Chinese Named Entity Recognition Across Text and Speech. - Jinzhong Ning; Yuanyuan Sun 002; Bo Xu 009; Zhihao Yang; Ling Luo 001; Hongfei Lin (EMNLP (Findings), 2024)

The Orthogonality of Weight Vectors: The Key Characteristics of Normalization and Residual Connections. - Zhixing Lu; Yuanyuan Sun 002; Zhihao Yang; Qin Zhou; Hongfei Lin (IJCAI, 2024)

Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks. - Ling Luo 001; Jinzhong Ning; Yingwen Zhao; Zhijun Wang; Zeyuan Ding; Peng Chen; Weiru Fu; Qinyu Han; Guangtao Xu; Yunzhi Qiu; Dinghao Pan; Jiru Li; et al. (J. Am. Medical Informatics Assoc., 2024)

JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps. - Jiru Li; Dinghao Pan; Zhihao Yang; Yuanyuan Sun 002; Hongfei Lin; Jian Wang 021 (Database J. Biol. Databases Curation, 2024)

LegalATLE: an active transfer learning framework for legal triple extraction. - Haiguang Zhang; Yuanyuan Sun 002; Bo Xu 009; Hongfei Lin (Appl. Intell., 2024)

Correction to: LegalATLE: an active transfer learning framework for legal triple extraction. - Haiguang Zhang; Yuanyuan Sun 002; Bo Xu 009; Hongfei Lin (Appl. Intell., 2024)

Sheep's Skin, Wolf's Deeds: Are LLMs Ready for Metaphorical Implicit Hate Speech? - Jingjie Zeng; Liang Yang 003; Zekun Wang; Yuanyuan Sun 002; Hongfei Lin (ACL (1), 2025)

Prototype Tuning: A Meta-Learning Approach for Few-Shot Document-Level Relation Extraction with Large Language Models. - Dinghao Pan; Yuanyuan Sun 002; Bo Xu 009; Jiru Li; Zhihao Yang; Ling Luo 001; Hongfei Lin; Jian Wang 021 (NAACL (Findings), 2025)

Improving generalization in DNNs through enhanced orthogonality in momentum-based optimizers. - Zhixing Lu; Yuanyuan Sun 002; Zhihao Yang; Yuanyu Zhang; Paerhati Tulajiang; Haochen Sun; Hongfei Lin (Inf. Process. Manag., 2025)

Intuition meets analytics: Reasoning implicit aspect-based sentiment quadruplets with a dual-system framework. - Zewen Bai; Yuanyuan Sun 002; Changrong Min; Junyu Lu; Haohao Zhu; Liang Yang 003; Hongfei Lin (Knowl. Based Syst., 2025)

Continual learning with high-order experience replay for dynamic network embedding. - Zhizheng Wang; Yuanyuan Sun 002; Xiaokun Zhang 001; Bo Xu 009; Zhihao Yang; Hongfei Lin (Pattern Recognit., 2025)

STATE ToxiCN: A Benchmark for Span-level Target-Aware Toxicity Extraction in Chinese Hate Speech Detection. - Zewen Bai; Yuanyuan Sun 002; Shengdi Yin; Junyu Lu; Jingjie Zeng; Haohao Zhu; Liang Yang 003; Hongfei Lin (CoRR, 2025)

Temporal Network Embedding Enhanced With Long-Range Dynamics and Self-Supervised Learning. - Zhizheng Wang; Yuanyuan Sun 002; Zhihao Yang; Liang Yang 003; Hongfei Lin (IEEE Trans. Neural Networks Learn. Syst., 2025)

Fine-Grained Chinese Hate Speech Understanding: Span-Level Resources, Coded Term Lexicon, and Enhanced Detection Frameworks. - Zewen Bai; Liang Yang 003; Shengdi Yin; Yuanyuan Sun 002; Hongfei Lin (CoRR, 2025)

IP2: Entity-Guided Interest Probing for Personalized News Recommendation. - Youlin Wu; Yuanyuan Sun 002; Xiaokun Zhang 001; Haoxi Zhan; Bo Xu 009; Liang Yang 003; Hongfei Lin (CoRR, 2025)

M2Metaphor: leveraging multi-modal fusion and hierarchical contrastive learning for metaphoric insights. - Jingjie Zeng; Liang Yang 003; Ruiyang Jin; Yuanyuan Sun 002; TieJun Xing; Hongfei Lin (Expert Syst. Appl., 2026)